Task 82101730

Name corona_RdRp_v2_sidock_01772851_r2_s-20_0
Workunit 53502757
Created 21 Jun 2024, 16:24:52 UTC
Sent 27 Jun 2024, 20:19:44 UTC
Report deadline 3 Jul 2024, 20:19:44 UTC
Received 29 Jun 2024, 0:36:14 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 2 hours 7 min 26 sec
CPU time 1 days 2 hours 5 min 49 sec
Validate state Valid
Credit 975.42
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.16 MB
Peak swap size 199.61 MB
Peak disk usage 20.42 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
00:51:54 (18471): wrapper (7.17.26016): starting
00:51:54 (18471): wrapper (7.17.26016): starting
00:51:54 (18471): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55e82cbe6f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7f9fb1f8f3c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f9fb1dcc03b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f9fb1dab859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7f9fb1e1629e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7f9fb1e1e32c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7f9fb1e1fb5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55e82cc033dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55e82cc228e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7f9fb1dcc0c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f9fb1e6626f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f9fb1e6bef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f9fb1e9e88f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55e82cbf8adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55e82cbc5784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f9fb1dad0b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55e82cbc1a3a]

Exiting...
13:55:03 (4888): wrapper (7.17.26016): starting
13:55:03 (4888): wrapper (7.17.26016): starting
13:55:03 (4888): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:36:02 (4888): cmdock exited; CPU time 49179.884431
03:36:02 (4888): called boinc_finish(0)

</stderr_txt>
]]>


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