Task 82101621

Name corona_RdRp_v2_sidock_01772795_r1_s-20_0
Workunit 53502644
Created 21 Jun 2024, 16:24:48 UTC
Sent 27 Jun 2024, 19:45:52 UTC
Report deadline 3 Jul 2024, 19:45:52 UTC
Received 29 Jun 2024, 0:03:48 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 18775
Run time 1 days 3 hours 11 min 52 sec
CPU time 1 days 3 hours 7 min 33 sec
Validate state Valid
Credit 1,183.47
Device peak FLOPS 6.24 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.25 MB
Peak swap size 200.11 MB
Peak disk usage 20.52 MB

Stderr output

<core_client_version>7.16.5</core_client_version>
<![CDATA[
<stderr_txt>
15:29:26 (24282): wrapper (7.17.26016): starting
15:29:26 (24282): wrapper (7.17.26016): starting
15:29:26 (24282): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/kle1boinc/BOINC/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55c9e5ff5f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f1426e43420]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f1426c8000b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f1426c5f859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d26e)[0x7f1426cca26e]
/lib/x86_64-linux-gnu/libc.so.6(+0x952fc)[0x7f1426cd22fc]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b2c)[0x7f1426cd3b2c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55c9e60123dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55c9e60318e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f1426c80090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f1426d1a23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f1426d1fec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f1426d52a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55c9e6007adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55c9e5fd4784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f1426c61083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55c9e5fd0a3a]

Exiting...
16:37:27 (2145): wrapper (7.17.26016): starting
16:37:27 (2145): wrapper (7.17.26016): starting
16:37:27 (2145): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/kle1boinc/BOINC/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:03:35 (2145): cmdock exited; CPU time 8741.065225
19:03:35 (2145): called boinc_finish(0)

</stderr_txt>
]]>


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