Task 82101406

Name corona_RdRp_v2_sidock_01772689_r1_s-20_0
Workunit 53502432
Created 21 Jun 2024, 16:24:32 UTC
Sent 27 Jun 2024, 18:33:48 UTC
Report deadline 3 Jul 2024, 18:33:48 UTC
Received 4 Jul 2024, 21:19:42 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 19974
Run time 1 days 10 hours 57 min 16 sec
CPU time 1 days 10 hours 34 min 22 sec
Validate state Valid
Credit 1,987.67
Device peak FLOPS 8.25 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.56 MB
Peak swap size 200.71 MB
Peak disk usage 20.67 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
20:33:53 (100455): wrapper (7.17.26016): starting
20:33:53 (100455): wrapper (7.17.26016): starting
20:33:53 (100455): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:14:48 (229606): wrapper (7.17.26016): starting
01:14:48 (229606): wrapper (7.17.26016): starting
01:14:48 (229606): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:14:00 (282068): wrapper (7.17.26016): starting
03:14:00 (282068): wrapper (7.17.26016): starting
03:14:00 (282068): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:38:36 (32365): wrapper (7.17.26016): starting
22:38:36 (32365): wrapper (7.17.26016): starting
22:38:36 (32365): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
08:11:56 (8317): wrapper (7.17.26016): starting
08:11:57 (8317): wrapper (7.17.26016): starting
08:11:57 (8317): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55cac6a3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f28722a2ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f2872309d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55cac6a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55cac6a7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f28722a2ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f2872344f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f2872350d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f287237bbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55cac6a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55cac6a1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f287228bc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f287228bd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55cac6a1aa3a]

Exiting...
21:22:47 (8336): wrapper (7.17.26016): starting
21:22:47 (8336): wrapper (7.17.26016): starting
21:22:47 (8336): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55c4de03ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f865ae3bae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f865aea2d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55c4de05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55c4de07b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f865ae3bae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f865aeddf43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f865aee9d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f865af14bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55c4de051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55c4de01e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f865ae24c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f865ae24d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55c4de01aa3a]

Exiting...
07:58:20 (8316): wrapper (7.17.26016): starting
07:58:20 (8316): wrapper (7.17.26016): starting
07:58:20 (8316): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:54:32 (6474): wrapper (7.17.26016): starting
16:54:32 (6474): wrapper (7.17.26016): starting
16:54:32 (6474): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5599f2c3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f0f97442ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f0f974a9d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5599f2c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5599f2c7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f0f97442ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f0f974e4f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f0f974f0d77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f0f9751bbda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5599f2c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5599f2c1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f0f9742bc88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f0f9742bd4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5599f2c1aa3a]

Exiting...
08:58:35 (6491): wrapper (7.17.26016): starting
08:58:35 (6491): wrapper (7.17.26016): starting
08:58:35 (6491): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x559eefc3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f7fec681ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f7fec6e8d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x559eefc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x559eefc7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f7fec681ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f7fec723f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f7fec72fd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f7fec75abda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x559eefc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x559eefc1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f7fec66ac88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f7fec66ad4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x559eefc1aa3a]

Exiting...
11:53:35 (6467): wrapper (7.17.26016): starting
11:53:35 (6467): wrapper (7.17.26016): starting
11:53:35 (6467): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55cba043ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f58a90dcae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f58a9143d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55cba045c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55cba047b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f58a90dcae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f58a917ef43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f58a918ad77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f58a91b5bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55cba0451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55cba041e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f58a90c5c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f58a90c5d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55cba041aa3a]

Exiting...
14:13:33 (7825): wrapper (7.17.26016): starting
14:13:33 (7825): wrapper (7.17.26016): starting
14:13:33 (7825): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:16:59 (40218): wrapper (7.17.26016): starting
14:16:59 (40218): wrapper (7.17.26016): starting
14:16:59 (40218): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55dff923ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f5f62341ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f5f623a8d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55dff925c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55dff927b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f5f62341ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f5f623e3f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f5f623efd77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f5f6241abda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55dff9251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55dff921e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f5f6232ac88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f5f6232ad4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55dff921aa3a]

Exiting...
21:40:40 (7945): wrapper (7.17.26016): starting
21:40:41 (7945): wrapper (7.17.26016): starting
21:40:41 (7945): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55a364c3ff8c]
/usr/lib/libc.so.6(+0x3cae0)[0x7f341f120ae0]
/usr/lib/libc.so.6(__libc_free+0x25)[0x7f341f187d55]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55a364c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55a364c7b8e4]
/usr/lib/libc.so.6(+0x3cae0)[0x7f341f120ae0]
/usr/lib/libc.so.6(clock_nanosleep+0x63)[0x7f341f1c2f43]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7f341f1ced77]
/usr/lib/libc.so.6(usleep+0x4a)[0x7f341f1f9bda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55a364c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55a364c1e784]
/usr/lib/libc.so.6(+0x25c88)[0x7f341f109c88]
/usr/lib/libc.so.6(__libc_start_main+0x8c)[0x7f341f109d4c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55a364c1aa3a]

Exiting...
08:00:47 (8061): wrapper (7.17.26016): starting
08:00:47 (8061): wrapper (7.17.26016): starting
08:00:47 (8061): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:19:32 (8061): cmdock exited; CPU time 54372.458384
23:19:32 (8061): called boinc_finish(0)

</stderr_txt>
]]>


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