Task 82100261

Name	corona_RdRp_v2_sidock_01772116_r1_s-20_0
Workunit	53501286
Created	21 Jun 2024, 16:23:30 UTC
Sent	27 Jun 2024, 13:05:23 UTC
Report deadline	3 Jul 2024, 13:05:23 UTC
Received	3 Jul 2024, 16:36:41 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	57304
Run time	22 hours 27 min 56 sec
CPU time	22 hours 16 min 33 sec
Validate state	Valid
Credit	829.87
Device peak FLOPS	9.23 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.36 MB
Peak swap size	199.04 MB
Peak disk usage	20.73 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
15:10:57 (2483328): wrapper (7.17.26016): starting
15:10:58 (2483328): wrapper (7.17.26016): starting
15:10:58 (2483328): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ea4ce3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f8baedce520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f8baee229fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f8baedce476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f8baedb47f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f8baee15676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f8baee2ccfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f8baee2ea44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f8baee31453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ea4ce5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ea4ce7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f8baedce520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f8baee717f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f8baee76677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f8baeea7f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ea4ce51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ea4ce1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f8baedb5d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f8baedb5e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ea4ce1aa3a]

Exiting...
13:08:23 (2538536): wrapper (7.17.26016): starting
13:08:23 (2538536): wrapper (7.17.26016): starting
13:08:23 (2538536): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5625ab83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f4cb50fa520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f4cb514e9fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f4cb50fa476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f4cb50e07f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f4cb5141676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f4cb5158cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f4cb515aa44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f4cb515d453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5625ab85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5625ab87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f4cb50fa520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f4cb519d7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f4cb51a2677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f4cb51d3f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5625ab851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5625ab81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f4cb50e1d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f4cb50e1e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5625ab81aa3a]

Exiting...
18:11:54 (253308): wrapper (7.17.26016): starting
18:11:54 (253308): wrapper (7.17.26016): starting
18:11:54 (253308): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:36:29 (253308): cmdock exited; CPU time 1460.629737
18:36:29 (253308): called boinc_finish(0)

</stderr_txt>
]]>