Task 82100059

Name	corona_RdRp_v2_sidock_01772013_r2_s-20_0
Workunit	53501081
Created	21 Jun 2024, 16:23:17 UTC
Sent	27 Jun 2024, 11:42:56 UTC
Report deadline	3 Jul 2024, 11:42:56 UTC
Received	5 Jul 2024, 2:52:08 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	57304
Run time	2 days 9 hours 52 min 26 sec
CPU time	2 days 9 hours 40 min 42 sec
Validate state	Valid
Credit	2,229.72
Device peak FLOPS	9.23 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	195.07 MB
Peak swap size	201.69 MB
Peak disk usage	20.86 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
13:48:53 (2482377): wrapper (7.17.26016): starting
13:48:53 (2482377): wrapper (7.17.26016): starting
13:48:53 (2482377): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557c0203ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f5a71af4520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f5a71b489fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f5a71af4476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f5a71ada7f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f5a71b3b676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f5a71b52cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f5a71b54a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f5a71b57453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557c0205c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557c0207b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f5a71af4520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f5a71b977f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f5a71b9c677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f5a71bcdf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557c02051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557c0201e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f5a71adbd90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f5a71adbe40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557c0201aa3a]

Exiting...
13:08:23 (2538535): wrapper (7.17.26016): starting
13:08:23 (2538535): wrapper (7.17.26016): starting
13:08:23 (2538535): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x564a8c63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fe907fab520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fe907fff9fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fe907fab476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fe907f917f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7fe907ff2676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7fe908009cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7fe90800ba44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7fe90800e453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x564a8c65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x564a8c67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fe907fab520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7fe90804e7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7fe908053677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fe908084f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x564a8c651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x564a8c61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fe907f92d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fe907f92e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x564a8c61aa3a]

Exiting...
18:11:54 (253307): wrapper (7.17.26016): starting
18:11:54 (253307): wrapper (7.17.26016): starting
18:11:54 (253307): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/19/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
04:51:58 (253307): cmdock exited; CPU time 124772.610904
04:51:58 (253307): called boinc_finish(0)

</stderr_txt>
]]>