Task 82099920

Name	corona_RdRp_v2_sidock_01771946_r1_s-20_0
Workunit	53500946
Created	21 Jun 2024, 16:23:11 UTC
Sent	27 Jun 2024, 11:09:57 UTC
Report deadline	3 Jul 2024, 11:09:57 UTC
Received	4 Jul 2024, 0:43:15 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	57304
Run time	1 days 8 hours 26 min 38 sec
CPU time	1 days 8 hours 14 min 35 sec
Validate state	Valid
Credit	1,237.79
Device peak FLOPS	9.23 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.33 MB
Peak swap size	199.98 MB
Peak disk usage	20.39 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
13:12:00 (2481840): wrapper (7.17.26016): starting
13:12:00 (2481840): wrapper (7.17.26016): starting
13:12:00 (2481840): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557533a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fbbfd14d520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fbbfd1a19fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fbbfd14d476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fbbfd1337f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7fbbfd194676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7fbbfd1abcfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7fbbfd1ada44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7fbbfd1b0453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557533a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557533a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fbbfd14d520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7fbbfd1f07f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7fbbfd1f5677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fbbfd226f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557533a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557533a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fbbfd134d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fbbfd134e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557533a1aa3a]

Exiting...
13:08:23 (2538534): wrapper (7.17.26016): starting
13:08:23 (2538534): wrapper (7.17.26016): starting
13:08:23 (2538534): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55e73e83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f7c3373e520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f7c337929fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f7c3373e476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f7c337247f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f7c33785676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f7c3379ccfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f7c3379ea44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f7c337a1453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55e73e85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55e73e87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f7c3373e520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f7c337e17f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f7c337e6677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f7c33817f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55e73e851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55e73e81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f7c33725d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f7c33725e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55e73e81aa3a]

Exiting...
18:11:54 (253306): wrapper (7.17.26016): starting
18:11:54 (253306): wrapper (7.17.26016): starting
18:11:54 (253306): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:43:02 (253306): cmdock exited; CPU time 30636.090004
02:43:02 (253306): called boinc_finish(0)

</stderr_txt>
]]>