Task 82099863

Name	corona_RdRp_v2_sidock_01771915_r2_s-20_0
Workunit	53500885
Created	21 Jun 2024, 16:23:04 UTC
Sent	27 Jun 2024, 10:52:07 UTC
Report deadline	3 Jul 2024, 10:52:07 UTC
Received	3 Jul 2024, 22:15:27 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	57304
Run time	1 days 6 hours 19 min 40 sec
CPU time	1 days 6 hours 6 min 40 sec
Validate state	Valid
Credit	1,149.52
Device peak FLOPS	9.23 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.48 MB
Peak swap size	201.24 MB
Peak disk usage	20.53 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
12:57:17 (2481651): wrapper (7.17.26016): starting
12:57:17 (2481651): wrapper (7.17.26016): starting
12:57:17 (2481651): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/26/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x563f3ce3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f9956bcc520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f9956c209fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f9956bcc476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f9956bb27f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f9956c13676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f9956c2acfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f9956c2ca44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f9956c2f453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x563f3ce5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x563f3ce7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f9956bcc520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f9956c6f7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f9956c74677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f9956ca5f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x563f3ce51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x563f3ce1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f9956bb3d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f9956bb3e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x563f3ce1aa3a]

Exiting...
13:08:23 (2538533): wrapper (7.17.26016): starting
13:08:23 (2538533): wrapper (7.17.26016): starting
13:08:23 (2538533): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/26/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55bcdee3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ff527b84520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7ff527bd89fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7ff527b84476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7ff527b6a7f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7ff527bcb676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7ff527be2cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7ff527be4a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7ff527be7453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55bcdee5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55bcdee7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7ff527b84520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7ff527c277f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7ff527c2c677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7ff527c5df2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55bcdee51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55bcdee1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7ff527b6bd90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7ff527b6be40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55bcdee1aa3a]

Exiting...
18:11:54 (253305): wrapper (7.17.26016): starting
18:11:54 (253305): wrapper (7.17.26016): starting
18:11:54 (253305): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/26/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:15:13 (253305): cmdock exited; CPU time 21767.843888
00:15:13 (253305): called boinc_finish(0)

</stderr_txt>
]]>