Task 82099506

Name	corona_RdRp_v2_sidock_01771738_r2_s-20_0
Workunit	53500531
Created	21 Jun 2024, 16:22:40 UTC
Sent	27 Jun 2024, 9:16:42 UTC
Report deadline	3 Jul 2024, 9:16:42 UTC
Received	3 Jul 2024, 23:16:13 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	57304
Run time	1 days 8 hours 52 min 40 sec
CPU time	1 days 8 hours 39 min 32 sec
Validate state	Valid
Credit	1,255.76
Device peak FLOPS	9.23 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.42 MB
Peak swap size	200.98 MB
Peak disk usage	20.58 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
11:22:14 (2479979): wrapper (7.17.26016): starting
11:22:14 (2479979): wrapper (7.17.26016): starting
11:22:14 (2479979): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557f3c63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7eff70e9a520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7eff70eee9fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7eff70e9a476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7eff70e807f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7eff70ee1676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7eff70ef8cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7eff70efaa44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7eff70efd453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557f3c65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557f3c67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7eff70e9a520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7eff70f3d7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7eff70f42677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7eff70f73f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557f3c651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557f3c61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7eff70e81d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7eff70e81e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557f3c61aa3a]

Exiting...
13:08:23 (2538530): wrapper (7.17.26016): starting
13:08:23 (2538530): wrapper (7.17.26016): starting
13:08:23 (2538530): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x559b6223ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fbc13ece520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fbc13f229fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fbc13ece476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fbc13eb47f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7fbc13f15676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7fbc13f2ccfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7fbc13f2ea44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7fbc13f31453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x559b6225c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x559b6227b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fbc13ece520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7fbc13f717f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7fbc13f76677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fbc13fa7f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x559b62251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x559b6221e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fbc13eb5d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fbc13eb5e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x559b6221aa3a]

Exiting...
18:11:54 (253302): wrapper (7.17.26016): starting
18:11:54 (253302): wrapper (7.17.26016): starting
18:11:54 (253302): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/17/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:16:02 (253302): cmdock exited; CPU time 25422.181933
01:16:02 (253302): called boinc_finish(0)

</stderr_txt>
]]>