Task 82099417

Name	corona_RdRp_v2_sidock_01771695_r1_s-20_0
Workunit	53500444
Created	21 Jun 2024, 16:22:36 UTC
Sent	27 Jun 2024, 9:05:03 UTC
Report deadline	3 Jul 2024, 9:05:03 UTC
Received	29 Jun 2024, 5:39:17 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	55179
Run time	1 days 18 hours 54 min 21 sec
CPU time	1 days 18 hours 42 min 59 sec
Validate state	Valid
Credit	1,085.62
Device peak FLOPS	5.77 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.48 MB
Peak swap size	200.91 MB
Peak disk usage	20.43 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
13:19:28 (78241): wrapper (7.17.26016): starting
13:19:29 (78241): wrapper (7.17.26016): starting
13:19:29 (78241): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5c9fb163ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x75490fcaa4b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x75490fd16ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5c9fb165c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5c9fb167b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x75490fcaa4b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x75490fd46f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x75490fd54447]
/usr/lib/libc.so.6(usleep+0x47)[0x75490fd84977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5c9fb1651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5c9fb161e784]
/usr/lib/libc.so.6(+0x25f8e)[0x75490fc8ef8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x75490fc8f04a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5c9fb161aa3a]

Exiting...
13:21:55 (4957): wrapper (7.17.26016): starting
13:21:55 (4957): wrapper (7.17.26016): starting
13:21:55 (4957): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x644ccf63ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x78eed74234b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x78eed748fede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x644ccf65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x644ccf67b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x78eed74234b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x78eed74bff85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x78eed74cd447]
/usr/lib/libc.so.6(usleep+0x47)[0x78eed74fd977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x644ccf651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x644ccf61e784]
/usr/lib/libc.so.6(+0x25f8e)[0x78eed7407f8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x78eed740804a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x644ccf61aa3a]

Exiting...
16:59:18 (4730): wrapper (7.17.26016): starting
16:59:19 (4730): wrapper (7.17.26016): starting
16:59:19 (4730): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x567ba2c3ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x7b237202a4b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x7b2372096ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x567ba2c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x567ba2c7b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x7b237202a4b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x7b23720c6f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7b23720d4447]
/usr/lib/libc.so.6(usleep+0x47)[0x7b2372104977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x567ba2c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x567ba2c1e784]
/usr/lib/libc.so.6(+0x25f8e)[0x7b237200ef8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x7b237200f04a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x567ba2c1aa3a]

Exiting...
08:06:52 (4992): wrapper (7.17.26016): starting
08:06:52 (4992): wrapper (7.17.26016): starting
08:06:52 (4992): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f2e9743ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x76f4d8d904b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x76f4d8dfcede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f2e9745c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f2e9747b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x76f4d8d904b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x76f4d8e2cf85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x76f4d8e3a447]
/usr/lib/libc.so.6(usleep+0x47)[0x76f4d8e6a977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f2e97451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f2e9741e784]
/usr/lib/libc.so.6(+0x25f8e)[0x76f4d8d74f8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x76f4d8d7504a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f2e9741aa3a]

Exiting...
15:51:39 (4716): wrapper (7.17.26016): starting
15:51:39 (4716): wrapper (7.17.26016): starting
15:51:39 (4716): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
08:39:07 (4716): cmdock exited; CPU time 60207.395078
08:39:07 (4716): called boinc_finish(0)

</stderr_txt>
]]>