Task 82099412

Name	corona_RdRp_v2_sidock_01771691_r2_s-20_0
Workunit	53500437
Created	21 Jun 2024, 16:22:36 UTC
Sent	27 Jun 2024, 9:10:12 UTC
Report deadline	3 Jul 2024, 9:10:12 UTC
Received	3 Jul 2024, 18:52:21 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	57304
Run time	1 days 4 hours 40 min 50 sec
CPU time	1 days 4 hours 27 min 55 sec
Validate state	Valid
Credit	1,079.95
Device peak FLOPS	9.23 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	195.10 MB
Peak swap size	201.64 MB
Peak disk usage	20.49 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
11:18:38 (2479938): wrapper (7.17.26016): starting
11:18:38 (2479938): wrapper (7.17.26016): starting
11:18:38 (2479938): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55bfe023ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fe0f6931520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fe0f69859fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fe0f6931476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fe0f69177f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7fe0f6978676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7fe0f698fcfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7fe0f6991a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7fe0f6994453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55bfe025c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55bfe027b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fe0f6931520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7fe0f69d47f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7fe0f69d9677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fe0f6a0af2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55bfe0251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55bfe021e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fe0f6918d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fe0f6918e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55bfe021aa3a]

Exiting...
13:08:23 (2538529): wrapper (7.17.26016): starting
13:08:23 (2538529): wrapper (7.17.26016): starting
13:08:23 (2538529): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (22 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55c249a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f0c92261520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f0c922b59fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f0c92261476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f0c922477f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f0c922a8676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f0c922bfcfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f0c922c1a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f0c922c4453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55c249a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55c249a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f0c92261520]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x55c249a3aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f0c92261520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f0c923047f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f0c92309677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f0c9233af2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55c249a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55c249a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f0c92248d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f0c92248e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55c249a1aa3a]

Exiting...
18:11:54 (253301): wrapper (7.17.26016): starting
18:11:54 (253301): wrapper (7.17.26016): starting
18:11:54 (253301): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/15/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:52:09 (253301): cmdock exited; CPU time 9585.302944
20:52:09 (253301): called boinc_finish(0)

</stderr_txt>
]]>