Task 82099285

Name	corona_RdRp_v2_sidock_01771627_r2_s-20_0
Workunit	53500309
Created	21 Jun 2024, 16:22:31 UTC
Sent	27 Jun 2024, 8:17:43 UTC
Report deadline	3 Jul 2024, 8:17:43 UTC
Received	4 Jul 2024, 19:04:51 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	57304
Run time	2 days 5 hours 36 min 8 sec
CPU time	2 days 5 hours 22 min 27 sec
Validate state	Valid
Credit	2,132.03
Device peak FLOPS	9.23 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.46 MB
Peak swap size	201.22 MB
Peak disk usage	20.70 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
10:19:05 (2479524): wrapper (7.17.26016): starting
10:19:05 (2479524): wrapper (7.17.26016): starting
10:19:05 (2479524): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (22 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x561d8663ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f9f9d420520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f9f9d4749fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f9f9d420476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f9f9d4067f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f9f9d467676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f9f9d47ecfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f9f9d480a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f9f9d483453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x561d8665c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x561d8667b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f9f9d420520]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x561d8663aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f9f9d420520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f9f9d4c37f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f9f9d4c8677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f9f9d4f9f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x561d86651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x561d8661e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f9f9d407d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f9f9d407e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x561d8661aa3a]

Exiting...
13:08:23 (2538528): wrapper (7.17.26016): starting
13:08:23 (2538528): wrapper (7.17.26016): starting
13:08:23 (2538528): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5608d983ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fb3e09a8520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fb3e09fc9fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fb3e09a8476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fb3e098e7f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7fb3e09ef676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7fb3e0a06cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7fb3e0a08a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7fb3e0a0b453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5608d985c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5608d987b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fb3e09a8520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7fb3e0a4b7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7fb3e0a50677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fb3e0a81f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5608d9851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5608d981e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fb3e098fd90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fb3e098fe40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5608d981aa3a]

Exiting...
18:11:54 (253300): wrapper (7.17.26016): starting
18:11:54 (253300): wrapper (7.17.26016): starting
18:11:54 (253300): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:04:39 (253300): cmdock exited; CPU time 96719.539817
21:04:39 (253300): called boinc_finish(0)

</stderr_txt>
]]>