Task 82099075

Name	corona_RdRp_v2_sidock_01771524_r1_s-20_0
Workunit	53500102
Created	21 Jun 2024, 16:22:18 UTC
Sent	27 Jun 2024, 7:48:15 UTC
Report deadline	3 Jul 2024, 7:48:15 UTC
Received	3 Jul 2024, 18:13:53 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	57304
Run time	1 days 5 hours 21 min 44 sec
CPU time	1 days 5 hours 7 min 50 sec
Validate state	Valid
Credit	1,099.40
Device peak FLOPS	9.23 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.27 MB
Peak swap size	200.93 MB
Peak disk usage	20.59 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
09:53:58 (2479332): wrapper (7.17.26016): starting
09:53:58 (2479332): wrapper (7.17.26016): starting
09:53:58 (2479332): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/25/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5577a103ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f8bed138520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f8bed18c9fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f8bed138476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f8bed11e7f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f8bed17f676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f8bed196cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f8bed198a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f8bed19b453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5577a105c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5577a107b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f8bed138520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f8bed1db7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f8bed1e0677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f8bed211f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5577a1051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5577a101e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f8bed11fd90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f8bed11fe40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5577a101aa3a]

Exiting...
13:08:23 (2538527): wrapper (7.17.26016): starting
13:08:23 (2538527): wrapper (7.17.26016): starting
13:08:23 (2538527): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/25/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b8a2c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fe9452ca520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fe94531e9fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fe9452ca476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fe9452b07f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7fe945311676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7fe945328cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7fe94532aa44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7fe94532d453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b8a2c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b8a2c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fe9452ca520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7fe94536d7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7fe945372677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fe9453a3f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b8a2c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b8a2c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fe9452b1d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fe9452b1e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b8a2c1aa3a]

Exiting...
18:11:54 (253299): wrapper (7.17.26016): starting
18:11:54 (253299): wrapper (7.17.26016): starting
18:11:54 (253299): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/25/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:13:42 (253299): cmdock exited; CPU time 7276.506666
20:13:42 (253299): called boinc_finish(0)

</stderr_txt>
]]>