Task 82098949

Name	corona_RdRp_v2_sidock_01771460_r2_s-20_0
Workunit	53499975
Created	21 Jun 2024, 16:22:11 UTC
Sent	27 Jun 2024, 7:07:33 UTC
Report deadline	3 Jul 2024, 7:07:33 UTC
Received	3 Jul 2024, 18:34:24 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	57304
Run time	1 days 6 hours 5 min 29 sec
CPU time	1 days 5 hours 51 min 24 sec
Validate state	Valid
Credit	1,129.60
Device peak FLOPS	9.23 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.94 MB
Peak swap size	201.64 MB
Peak disk usage	20.47 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
09:22:28 (2479074): wrapper (7.17.26016): starting
09:22:29 (2479074): wrapper (7.17.26016): starting
09:22:29 (2479074): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/24/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5561eb03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f56d8fa9520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f56d8ffd9fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f56d8fa9476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f56d8f8f7f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f56d8ff0676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f56d9007cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f56d9009a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f56d900c453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5561eb05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5561eb07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f56d8fa9520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f56d904c7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f56d9051677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f56d9082f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5561eb051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5561eb01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f56d8f90d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f56d8f90e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5561eb01aa3a]

Exiting...
13:08:23 (2538526): wrapper (7.17.26016): starting
13:08:23 (2538526): wrapper (7.17.26016): starting
13:08:23 (2538526): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/24/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55a43083ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f7c1110e520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f7c111629fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f7c1110e476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f7c110f47f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f7c11155676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f7c1116ccfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f7c1116ea44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f7c11171453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55a43085c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55a43087b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f7c1110e520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f7c111b17f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f7c111b6677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f7c111e7f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55a430851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55a43081e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f7c110f5d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f7c110f5e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55a43081aa3a]

Exiting...
18:11:54 (253298): wrapper (7.17.26016): starting
18:11:54 (253298): wrapper (7.17.26016): starting
18:11:54 (253298): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/24/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:34:12 (253298): cmdock exited; CPU time 8512.402808
20:34:12 (253298): called boinc_finish(0)

</stderr_txt>
]]>