Task 82098717

Name	corona_RdRp_v2_sidock_01771343_r1_s-20_0
Workunit	53499740
Created	21 Jun 2024, 16:22:02 UTC
Sent	27 Jun 2024, 6:17:30 UTC
Report deadline	3 Jul 2024, 6:17:30 UTC
Received	29 Jun 2024, 13:40:17 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	55179
Run time	2 days 4 hours 55 min 39 sec
CPU time	2 days 4 hours 42 min 12 sec
Validate state	Valid
Credit	1,312.36
Device peak FLOPS	5.77 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.83 MB
Peak swap size	200.88 MB
Peak disk usage	20.68 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
10:39:10 (36992): wrapper (7.17.26016): starting
10:39:10 (36992): wrapper (7.17.26016): starting
10:39:10 (36992): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5b8587c3ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x708c9c0054b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x708c9c071ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5b8587c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5b8587c7b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x708c9c0054b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x708c9c0a1f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x708c9c0af447]
/usr/lib/libc.so.6(usleep+0x47)[0x708c9c0df977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5b8587c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5b8587c1e784]
/usr/lib/libc.so.6(+0x25f8e)[0x708c9bfe9f8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x708c9bfea04a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5b8587c1aa3a]

Exiting...
13:21:55 (4956): wrapper (7.17.26016): starting
13:21:55 (4956): wrapper (7.17.26016): starting
13:21:55 (4956): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5bbd3063ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x7ccc469f74b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x7ccc46a63ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5bbd3065c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5bbd3067b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x7ccc469f74b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x7ccc46a93f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7ccc46aa1447]
/usr/lib/libc.so.6(usleep+0x47)[0x7ccc46ad1977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5bbd30651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5bbd3061e784]
/usr/lib/libc.so.6(+0x25f8e)[0x7ccc469dbf8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x7ccc469dc04a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5bbd3061aa3a]

Exiting...
16:59:18 (4729): wrapper (7.17.26016): starting
16:59:19 (4729): wrapper (7.17.26016): starting
16:59:19 (4729): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55e10943ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x73635ea444b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x73635eab0ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55e10945c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55e10947b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x73635ea444b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x73635eae0f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x73635eaee447]
/usr/lib/libc.so.6(usleep+0x47)[0x73635eb1e977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55e109451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55e10941e784]
/usr/lib/libc.so.6(+0x25f8e)[0x73635ea28f8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x73635ea2904a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55e10941aa3a]

Exiting...
08:06:52 (4991): wrapper (7.17.26016): starting
08:06:52 (4991): wrapper (7.17.26016): starting
08:06:52 (4991): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x614c1883ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x70f420f0b4b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x70f420f77ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x614c1885c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x614c1887b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x70f420f0b4b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x70f420fa7f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x70f420fb5447]
/usr/lib/libc.so.6(usleep+0x47)[0x70f420fe5977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x614c18851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x614c1881e784]
/usr/lib/libc.so.6(+0x25f8e)[0x70f420eeff8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x70f420ef004a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x614c1881aa3a]

Exiting...
15:51:39 (4715): wrapper (7.17.26016): starting
15:51:39 (4715): wrapper (7.17.26016): starting
15:51:39 (4715): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:40:03 (4715): cmdock exited; CPU time 88954.330267
16:40:03 (4715): called boinc_finish(0)

</stderr_txt>
]]>