Task 82098680

Name	corona_RdRp_v2_sidock_01771326_r2_s-20_0
Workunit	53499707
Created	21 Jun 2024, 16:22:00 UTC
Sent	27 Jun 2024, 6:25:24 UTC
Report deadline	3 Jul 2024, 6:25:24 UTC
Received	3 Jul 2024, 20:24:17 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	57304
Run time	1 days 8 hours 44 min 3 sec
CPU time	1 days 8 hours 30 min 18 sec
Validate state	Valid
Credit	1,228.88
Device peak FLOPS	9.23 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.16 MB
Peak swap size	200.85 MB
Peak disk usage	20.43 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
08:33:40 (2478663): wrapper (7.17.26016): starting
08:33:40 (2478663): wrapper (7.17.26016): starting
08:33:40 (2478663): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557b2383ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f9377d58520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f9377dac9fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f9377d58476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f9377d3e7f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f9377d9f676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f9377db6cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f9377db8a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f9377dbb453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557b2385c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557b2387b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f9377d58520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f9377dfb7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f9377e00677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f9377e31f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557b23851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557b2381e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f9377d3fd90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f9377d3fe40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557b2381aa3a]

Exiting...
13:08:23 (2538525): wrapper (7.17.26016): starting
13:08:23 (2538525): wrapper (7.17.26016): starting
13:08:23 (2538525): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b7bea3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f2582839520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f258288d9fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f2582839476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f258281f7f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f2582880676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f2582897cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f2582899a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f258289c453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b7bea5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b7bea7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f2582839520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f25828dc7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f25828e1677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f2582912f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b7bea51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b7bea1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f2582820d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f2582820e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b7bea1aa3a]

Exiting...
18:11:54 (253297): wrapper (7.17.26016): starting
18:11:54 (253297): wrapper (7.17.26016): starting
18:11:54 (253297): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:24:03 (253297): cmdock exited; CPU time 15102.544944
22:24:03 (253297): called boinc_finish(0)

</stderr_txt>
]]>