Task 82098538

Name corona_RdRp_v2_sidock_01771256_r2_s-20_0
Workunit 53499567
Created 21 Jun 2024, 16:21:49 UTC
Sent 27 Jun 2024, 5:11:49 UTC
Report deadline 3 Jul 2024, 5:11:49 UTC
Received 28 Jun 2024, 15:32:49 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 1 hours 18 min 8 sec
CPU time 1 days 1 hours 17 min 4 sec
Validate state Valid
Credit 966.23
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.91 MB
Peak swap size 200.58 MB
Peak disk usage 20.54 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
16:34:45 (5208): wrapper (7.17.26016): starting
16:34:45 (5208): wrapper (7.17.26016): starting
16:34:45 (5208): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557a00673f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7fbed78993c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fbed76d603b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fbed76b5859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7fbed772029e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7fbed772832c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7fbed7729b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557a006903dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557a006af8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7fbed76d60c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fbed777026f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fbed7775ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fbed77a888f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557a00685adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557a00652784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fbed76b70b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557a0064ea3a]

Exiting...
13:55:03 (4886): wrapper (7.17.26016): starting
13:55:03 (4886): wrapper (7.17.26016): starting
13:55:03 (4886): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:32:41 (4886): cmdock exited; CPU time 16637.708807
18:32:41 (4886): called boinc_finish(0)

</stderr_txt>
]]>


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