Task 82096442

Name corona_RdRp_v2_sidock_01770211_r1_s-20_0
Workunit 53497476
Created 21 Jun 2024, 16:19:53 UTC
Sent 26 Jun 2024, 16:05:45 UTC
Report deadline 2 Jul 2024, 16:05:45 UTC
Received 28 Jun 2024, 0:37:27 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 0 hours 1 min 42 sec
CPU time 1 days 0 hours 0 min 6 sec
Validate state Valid
Credit 925.47
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.70 MB
Peak swap size 201.22 MB
Peak disk usage 20.65 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
21:03:08 (56711): wrapper (7.17.26016): starting
21:03:09 (56711): wrapper (7.17.26016): starting
21:03:09 (56711): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x561f12520f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7f30868983c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f30866d503b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f30866b4859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7f308671f29e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7f308672732c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7f3086728b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x561f1253d3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x561f1255c8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7f30866d50c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f308676f26f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f3086774ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f30867a788f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x561f12532adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x561f124ff784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f30866b60b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x561f124fba3a]

Exiting...
12:48:43 (12420): wrapper (7.17.26016): starting
12:48:43 (12420): wrapper (7.17.26016): starting
12:48:43 (12420): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:15:03 (3497): wrapper (7.17.26016): starting
16:15:03 (3497): wrapper (7.17.26016): starting
16:15:03 (3497): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:37:19 (3497): cmdock exited; CPU time 40899.838985
03:37:19 (3497): called boinc_finish(0)

</stderr_txt>
]]>


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