Task 82094615

Name	corona_RdRp_v2_sidock_01769294_r1_s-20_0
Workunit	53495642
Created	21 Jun 2024, 16:18:09 UTC
Sent	26 Jun 2024, 6:44:42 UTC
Report deadline	2 Jul 2024, 6:44:42 UTC
Received	2 Jul 2024, 18:41:27 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	56209
Run time	17 hours 5 min 53 sec
CPU time	17 hours 4 min 55 sec
Validate state	Valid
Credit	1,489.64
Device peak FLOPS	7.31 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.36 MB
Peak swap size	219.87 MB
Peak disk usage	20.50 MB
Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:05:48 (17923): wrapper (7.17.26016): starting
03:05:48 (17923): wrapper (7.17.26016): starting
03:05:48 (17923): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56109943ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f916fa3e6f0]
/lib64/libc.so.6(free+0x1e)[0x7f916fa99cfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56109945c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56109947b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f916fa3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f916fad4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f916fad8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f916fb04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x561099451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56109941e784]
/lib64/libc.so.6(+0x29590)[0x7f916fa29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f916fa29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56109941aa3a]

Exiting...
06:11:46 (2738): wrapper (7.17.26016): starting
06:11:46 (2738): wrapper (7.17.26016): starting
06:11:46 (2738): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x563bdfc3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fd84403e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7fd84408b94c]
/lib64/libc.so.6(raise+0x16)[0x7fd84403e646]
/lib64/libc.so.6(abort+0xd3)[0x7fd8440287f3]
/lib64/libc.so.6(+0x29130)[0x7fd844029130]
/lib64/libc.so.6(+0x959f7)[0x7fd8440959f7]
/lib64/libc.so.6(+0x972ac)[0x7fd8440972ac]
/lib64/libc.so.6(free+0x55)[0x7fd844099d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x563bdfc5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x563bdfc7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fd84403e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fd8440d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fd8440d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7fd844104b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x563bdfc51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x563bdfc1e784]
/lib64/libc.so.6(+0x29590)[0x7fd844029590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fd844029640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x563bdfc1aa3a]

Exiting...
11:21:58 (2725): wrapper (7.17.26016): starting
11:21:59 (2725): wrapper (7.17.26016): starting
11:21:59 (2725): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55f8d8c3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f40b3c3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f40b3c8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f40b3c3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f40b3c287f3]
/lib64/libc.so.6(+0x29130)[0x7f40b3c29130]
/lib64/libc.so.6(+0x959f7)[0x7f40b3c959f7]
/lib64/libc.so.6(+0x972ac)[0x7f40b3c972ac]
/lib64/libc.so.6(free+0x55)[0x7f40b3c99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55f8d8c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55f8d8c7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f40b3c3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f40b3cd4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f40b3cd8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f40b3d04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55f8d8c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55f8d8c1e784]
/lib64/libc.so.6(+0x29590)[0x7f40b3c29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f40b3c29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55f8d8c1aa3a]

Exiting...
04:13:23 (2511): wrapper (7.17.26016): starting
04:13:23 (2511): wrapper (7.17.26016): starting
04:13:23 (2511): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56502783ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fdc4a43e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7fdc4a48b94c]
/lib64/libc.so.6(raise+0x16)[0x7fdc4a43e646]
/lib64/libc.so.6(abort+0xd3)[0x7fdc4a4287f3]
/lib64/libc.so.6(+0x29130)[0x7fdc4a429130]
/lib64/libc.so.6(+0x959f7)[0x7fdc4a4959f7]
/lib64/libc.so.6(+0x972ac)[0x7fdc4a4972ac]
/lib64/libc.so.6(free+0x55)[0x7fdc4a499d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56502785c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56502787b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fdc4a43e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fdc4a4d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fdc4a4d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7fdc4a504b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x565027851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56502781e784]
/lib64/libc.so.6(+0x29590)[0x7fdc4a429590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fdc4a429640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56502781aa3a]

Exiting...
06:26:31 (2722): wrapper (7.17.26016): starting
06:26:31 (2722): wrapper (7.17.26016): starting
06:26:31 (2722): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:41:17 (2722): cmdock exited; CPU time 23720.595371
14:41:17 (2722): called boinc_finish(0)

</stderr_txt>
]]>