Task 82094568

Name	corona_RdRp_v2_sidock_01769270_r2_s-20_0
Workunit	53495595
Created	21 Jun 2024, 16:18:06 UTC
Sent	26 Jun 2024, 6:57:13 UTC
Report deadline	2 Jul 2024, 6:57:13 UTC
Received	2 Jul 2024, 19:10:38 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	56209
Run time	17 hours 13 min 8 sec
CPU time	17 hours 11 min 47 sec
Validate state	Valid
Credit	1,501.02
Device peak FLOPS	7.31 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	191.75 MB
Peak swap size	219.87 MB
Peak disk usage	20.09 MB
Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:23:02 (138342): wrapper (7.17.26016): starting
03:23:03 (138342): wrapper (7.17.26016): starting
03:23:03 (138342): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56272203ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fb6f663e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7fb6f668b94c]
/lib64/libc.so.6(raise+0x16)[0x7fb6f663e646]
/lib64/libc.so.6(abort+0xd3)[0x7fb6f66287f3]
/lib64/libc.so.6(+0x29130)[0x7fb6f6629130]
/lib64/libc.so.6(+0x959f7)[0x7fb6f66959f7]
/lib64/libc.so.6(+0x972ac)[0x7fb6f66972ac]
/lib64/libc.so.6(free+0x55)[0x7fb6f6699d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56272205c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56272207b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fb6f663e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fb6f66d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fb6f66d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7fb6f6704b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x562722051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56272201e784]
/lib64/libc.so.6(+0x29590)[0x7fb6f6629590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fb6f6629640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56272201aa3a]

Exiting...
06:11:46 (2740): wrapper (7.17.26016): starting
06:11:46 (2740): wrapper (7.17.26016): starting
06:11:46 (2740): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55d04523ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f7848e3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f7848e8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f7848e3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f7848e287f3]
/lib64/libc.so.6(+0x29130)[0x7f7848e29130]
/lib64/libc.so.6(+0x959f7)[0x7f7848e959f7]
/lib64/libc.so.6(+0x972ac)[0x7f7848e972ac]
/lib64/libc.so.6(free+0x55)[0x7f7848e99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55d04525c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55d04527b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f7848e3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f7848ed4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f7848ed8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f7848f04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55d045251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55d04521e784]
/lib64/libc.so.6(+0x29590)[0x7f7848e29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f7848e29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55d04521aa3a]

Exiting...
11:21:58 (2737): wrapper (7.17.26016): starting
11:21:59 (2737): wrapper (7.17.26016): starting
11:21:59 (2737): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56005423ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f6b0603e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f6b0608b94c]
/lib64/libc.so.6(raise+0x16)[0x7f6b0603e646]
/lib64/libc.so.6(abort+0xd3)[0x7f6b060287f3]
/lib64/libc.so.6(+0x29130)[0x7f6b06029130]
/lib64/libc.so.6(+0x959f7)[0x7f6b060959f7]
/lib64/libc.so.6(+0x972ac)[0x7f6b060972ac]
/lib64/libc.so.6(free+0x55)[0x7f6b06099d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56005425c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56005427b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f6b0603e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f6b060d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f6b060d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f6b06104b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x560054251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56005421e784]
/lib64/libc.so.6(+0x29590)[0x7f6b06029590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f6b06029640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56005421aa3a]

Exiting...
04:13:23 (2512): wrapper (7.17.26016): starting
04:13:23 (2512): wrapper (7.17.26016): starting
04:13:23 (2512): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557741c3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f730683e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f730688b94c]
/lib64/libc.so.6(raise+0x16)[0x7f730683e646]
/lib64/libc.so.6(abort+0xd3)[0x7f73068287f3]
/lib64/libc.so.6(+0x29130)[0x7f7306829130]
/lib64/libc.so.6(+0x959f7)[0x7f73068959f7]
/lib64/libc.so.6(+0x972ac)[0x7f73068972ac]
/lib64/libc.so.6(free+0x55)[0x7f7306899d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557741c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557741c7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f730683e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f73068d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f73068d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f7306904b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557741c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557741c1e784]
/lib64/libc.so.6(+0x29590)[0x7f7306829590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f7306829640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557741c1aa3a]

Exiting...
06:26:31 (2723): wrapper (7.17.26016): starting
06:26:31 (2723): wrapper (7.17.26016): starting
06:26:31 (2723): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
15:10:27 (2723): cmdock exited; CPU time 25119.991713
15:10:27 (2723): called boinc_finish(0)

</stderr_txt>
]]>