Task 82093565

Name	corona_RdRp_v2_sidock_01768768_r1_s-20_0
Workunit	53494590
Created	21 Jun 2024, 16:17:11 UTC
Sent	25 Jun 2024, 23:34:00 UTC
Report deadline	1 Jul 2024, 23:34:00 UTC
Received	2 Jul 2024, 18:22:18 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	56209
Run time	22 hours 28 min 18 sec
CPU time	22 hours 26 min 51 sec
Validate state	Valid
Credit	1,950.92
Device peak FLOPS	7.31 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.04 MB
Peak swap size	219.87 MB
Peak disk usage	20.63 MB
Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:49:54 (144722): wrapper (7.17.26016): starting
19:49:54 (144722): wrapper (7.17.26016): starting
19:49:54 (144722): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56323603ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fa38303e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7fa38308b94c]
/lib64/libc.so.6(raise+0x16)[0x7fa38303e646]
/lib64/libc.so.6(abort+0xd3)[0x7fa3830287f3]
/lib64/libc.so.6(+0x29130)[0x7fa383029130]
/lib64/libc.so.6(+0x959f7)[0x7fa3830959f7]
/lib64/libc.so.6(+0x972ac)[0x7fa3830972ac]
/lib64/libc.so.6(free+0x55)[0x7fa383099d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56323605c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56323607b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fa38303e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fa3830d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fa3830d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7fa383104b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x563236051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56323601e784]
/lib64/libc.so.6(+0x29590)[0x7fa383029590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fa383029640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56323601aa3a]

Exiting...
21:00:13 (2514): wrapper (7.17.26016): starting
21:00:13 (2514): wrapper (7.17.26016): starting
21:00:13 (2514): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x556baf23ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f8855c3e6f0]
/lib64/libc.so.6(free+0x1e)[0x7f8855c99cfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x556baf25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x556baf27b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f8855c3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f8855cd4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f8855cd8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f8855d04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x556baf251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x556baf21e784]
/lib64/libc.so.6(+0x29590)[0x7f8855c29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f8855c29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x556baf21aa3a]

Exiting...
22:01:08 (2526): wrapper (7.17.26016): starting
22:01:08 (2526): wrapper (7.17.26016): starting
22:01:08 (2526): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5647f563ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f019643e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f019648b94c]
/lib64/libc.so.6(raise+0x16)[0x7f019643e646]
/lib64/libc.so.6(abort+0xd3)[0x7f01964287f3]
/lib64/libc.so.6(+0x29130)[0x7f0196429130]
/lib64/libc.so.6(+0x959f7)[0x7f01964959f7]
/lib64/libc.so.6(+0x972ac)[0x7f01964972ac]
/lib64/libc.so.6(free+0x55)[0x7f0196499d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5647f565c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5647f567b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f019643e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f01964d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f01964d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f0196504b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5647f5651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5647f561e784]
/lib64/libc.so.6(+0x29590)[0x7f0196429590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f0196429640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5647f561aa3a]

Exiting...
06:11:46 (2737): wrapper (7.17.26016): starting
06:11:46 (2737): wrapper (7.17.26016): starting
06:11:46 (2737): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56229d63ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f47afe3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f47afe8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f47afe3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f47afe287f3]
/lib64/libc.so.6(+0x29130)[0x7f47afe29130]
/lib64/libc.so.6(+0x959f7)[0x7f47afe959f7]
/lib64/libc.so.6(+0x972ac)[0x7f47afe972ac]
/lib64/libc.so.6(free+0x55)[0x7f47afe99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56229d65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56229d67b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f47afe3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f47afed4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f47afed8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f47aff04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56229d651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56229d61e784]
/lib64/libc.so.6(+0x29590)[0x7f47afe29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f47afe29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56229d61aa3a]

Exiting...
11:21:58 (2724): wrapper (7.17.26016): starting
11:21:59 (2724): wrapper (7.17.26016): starting
11:21:59 (2724): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ef6503ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f8b8463e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f8b8468b94c]
/lib64/libc.so.6(raise+0x16)[0x7f8b8463e646]
/lib64/libc.so.6(abort+0xd3)[0x7f8b846287f3]
/lib64/libc.so.6(+0x29130)[0x7f8b84629130]
/lib64/libc.so.6(+0x959f7)[0x7f8b846959f7]
/lib64/libc.so.6(+0x972ac)[0x7f8b846972ac]
/lib64/libc.so.6(free+0x55)[0x7f8b84699d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ef6505c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ef6507b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f8b8463e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f8b846d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f8b846d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f8b84704b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ef65051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ef6501e784]
/lib64/libc.so.6(+0x29590)[0x7f8b84629590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f8b84629640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ef6501aa3a]

Exiting...
04:13:23 (2506): wrapper (7.17.26016): starting
04:13:23 (2506): wrapper (7.17.26016): starting
04:13:23 (2506): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55907223ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f7534c3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f7534c8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f7534c3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f7534c287f3]
/lib64/libc.so.6(+0x29130)[0x7f7534c29130]
/lib64/libc.so.6(+0x959f7)[0x7f7534c959f7]
/lib64/libc.so.6(+0x972ac)[0x7f7534c972ac]
/lib64/libc.so.6(free+0x55)[0x7f7534c99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55907225c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55907227b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f7534c3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f7534cd4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f7534cd8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f7534d04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x559072251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55907221e784]
/lib64/libc.so.6(+0x29590)[0x7f7534c29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f7534c29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55907221aa3a]

Exiting...
06:26:31 (2719): wrapper (7.17.26016): starting
06:26:31 (2719): wrapper (7.17.26016): starting
06:26:31 (2719): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:22:06 (2719): cmdock exited; CPU time 22802.412294
14:22:06 (2719): called boinc_finish(0)

</stderr_txt>
]]>