Task 82093362

Name corona_RdRp_v2_sidock_01768667_r2_s-20_0
Workunit 53494389
Created 21 Jun 2024, 16:16:57 UTC
Sent 25 Jun 2024, 22:24:27 UTC
Report deadline 1 Jul 2024, 22:24:27 UTC
Received 27 Jun 2024, 3:16:57 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 58833
Run time 18 hours 27 min 29 sec
CPU time 18 hours 23 min 59 sec
Validate state Valid
Credit 130.48
Device peak FLOPS 1.00 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 192.80 MB
Peak swap size 225.72 MB
Peak disk usage 20.45 MB

Stderr output

<core_client_version>7.24.3</core_client_version>
<![CDATA[
<stderr_txt>
00:24:42 (16224): wrapper (7.17.26016): starting
00:24:42 (16224): wrapper (7.17.26016): starting
00:24:42 (16224): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/persist/underbackup/config/frameworkino/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x560fd363ff8c]
/lib/libc.so.6(+0x3ff30)[0x7fbd7b880f30]
/lib/libc.so.6(+0x8fefc)[0x7fbd7b8d0efc]
/lib/libc.so.6(gsignal+0x16)[0x7fbd7b880e86]
/lib/libc.so.6(abort+0xd7)[0x7fbd7b869935]
/lib/libc.so.6(+0x297e6)[0x7fbd7b86a7e6]
/lib/libc.so.6(+0x99bd5)[0x7fbd7b8dabd5]
/lib/libc.so.6(+0x9bd94)[0x7fbd7b8dcd94]
/lib/libc.so.6(__libc_free+0x73)[0x7fbd7b8df613]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x560fd365c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x560fd367b8e4]
/lib/libc.so.6(+0x3ff30)[0x7fbd7b880f30]
/lib/libc.so.6(clock_nanosleep+0x65)[0x7fbd7b9170c5]
/lib/libc.so.6(nanosleep+0x17)[0x7fbd7b921da7]
/lib/libc.so.6(usleep+0x49)[0x7fbd7b94a8f9]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x560fd3651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x560fd361e784]
/lib/libc.so.6(+0x2a10e)[0x7fbd7b86b10e]
/lib/libc.so.6(__libc_start_main+0x89)[0x7fbd7b86b1c9]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x560fd361aa3a]

Exiting...
01:05:03 (2517): wrapper (7.17.26016): starting
01:05:03 (2517): wrapper (7.17.26016): starting
01:05:03 (2517): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/persist/underbackup/config/frameworkino/var/lib/boinc/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:16:48 (2517): cmdock exited; CPU time 65469.782144
05:16:48 (2517): called boinc_finish(0)

</stderr_txt>
]]>


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