Task 82093205

Name	corona_RdRp_v2_sidock_01768589_r2_s-20_0
Workunit	53494233
Created	21 Jun 2024, 16:16:50 UTC
Sent	25 Jun 2024, 21:23:08 UTC
Report deadline	1 Jul 2024, 21:23:08 UTC
Received	2 Jul 2024, 10:40:19 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	56209
Run time	18 hours 10 min 6 sec
CPU time	18 hours 9 min 9 sec
Validate state	Valid
Credit	1,609.90
Device peak FLOPS	7.31 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.25 MB
Peak swap size	219.87 MB
Peak disk usage	20.50 MB
Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:35:47 (143836): wrapper (7.17.26016): starting
17:35:47 (143836): wrapper (7.17.26016): starting
17:35:47 (143836): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5600af63ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f4d14e3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f4d14e8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f4d14e3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f4d14e287f3]
/lib64/libc.so.6(+0x29130)[0x7f4d14e29130]
/lib64/libc.so.6(+0x959f7)[0x7f4d14e959f7]
/lib64/libc.so.6(+0x972ac)[0x7f4d14e972ac]
/lib64/libc.so.6(free+0x55)[0x7f4d14e99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5600af65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5600af67b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f4d14e3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f4d14ed4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f4d14ed8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f4d14f04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5600af651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5600af61e784]
/lib64/libc.so.6(+0x29590)[0x7f4d14e29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f4d14e29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5600af61aa3a]

Exiting...
21:00:13 (2511): wrapper (7.17.26016): starting
21:00:13 (2511): wrapper (7.17.26016): starting
21:00:13 (2511): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x562dc823ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f10dde3e6f0]
/lib64/libc.so.6(free+0x1e)[0x7f10dde99cfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x562dc825c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x562dc827b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f10dde3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f10dded4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f10dded8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f10ddf04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x562dc8251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x562dc821e784]
/lib64/libc.so.6(+0x29590)[0x7f10dde29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f10dde29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x562dc821aa3a]

Exiting...
22:01:08 (2525): wrapper (7.17.26016): starting
22:01:08 (2525): wrapper (7.17.26016): starting
22:01:08 (2525): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x556d0e23ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f167803e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f167808b94c]
/lib64/libc.so.6(raise+0x16)[0x7f167803e646]
/lib64/libc.so.6(abort+0xd3)[0x7f16780287f3]
/lib64/libc.so.6(+0x29130)[0x7f1678029130]
/lib64/libc.so.6(+0x959f7)[0x7f16780959f7]
/lib64/libc.so.6(+0x972ac)[0x7f16780972ac]
/lib64/libc.so.6(free+0x55)[0x7f1678099d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x556d0e25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x556d0e27b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f167803e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f16780d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f16780d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f1678104b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x556d0e251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x556d0e21e784]
/lib64/libc.so.6(+0x29590)[0x7f1678029590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f1678029640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x556d0e21aa3a]

Exiting...
06:11:46 (2736): wrapper (7.17.26016): starting
06:11:46 (2736): wrapper (7.17.26016): starting
06:11:46 (2736): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55e06da3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fec5363e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7fec5368b94c]
/lib64/libc.so.6(raise+0x16)[0x7fec5363e646]
/lib64/libc.so.6(abort+0xd3)[0x7fec536287f3]
/lib64/libc.so.6(+0x29130)[0x7fec53629130]
/lib64/libc.so.6(+0x959f7)[0x7fec536959f7]
/lib64/libc.so.6(+0x972ac)[0x7fec536972ac]
/lib64/libc.so.6(free+0x55)[0x7fec53699d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55e06da5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55e06da7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fec5363e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fec536d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fec536d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7fec53704b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55e06da51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55e06da1e784]
/lib64/libc.so.6(+0x29590)[0x7fec53629590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fec53629640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55e06da1aa3a]

Exiting...
11:21:58 (2722): wrapper (7.17.26016): starting
11:21:59 (2722): wrapper (7.17.26016): starting
11:21:59 (2722): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56465043ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f4fbae3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f4fbae8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f4fbae3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f4fbae287f3]
/lib64/libc.so.6(+0x29130)[0x7f4fbae29130]
/lib64/libc.so.6(+0x959f7)[0x7f4fbae959f7]
/lib64/libc.so.6(+0x972ac)[0x7f4fbae972ac]
/lib64/libc.so.6(free+0x55)[0x7f4fbae99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56465045c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56465047b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f4fbae3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f4fbaed4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f4fbaed8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f4fbaf04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x564650451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56465041e784]
/lib64/libc.so.6(+0x29590)[0x7f4fbae29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f4fbae29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56465041aa3a]

Exiting...
04:13:23 (2504): wrapper (7.17.26016): starting
04:13:23 (2504): wrapper (7.17.26016): starting
04:13:23 (2504): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x563d02a3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fb98b43e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7fb98b48b94c]
/lib64/libc.so.6(raise+0x16)[0x7fb98b43e646]
/lib64/libc.so.6(abort+0xd3)[0x7fb98b4287f3]
/lib64/libc.so.6(+0x29130)[0x7fb98b429130]
/lib64/libc.so.6(+0x959f7)[0x7fb98b4959f7]
/lib64/libc.so.6(+0x972ac)[0x7fb98b4972ac]
/lib64/libc.so.6(free+0x55)[0x7fb98b499d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x563d02a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x563d02a7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fb98b43e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fb98b4d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fb98b4d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7fb98b504b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x563d02a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x563d02a1e784]
/lib64/libc.so.6(+0x29590)[0x7fb98b429590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fb98b429640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x563d02a1aa3a]

Exiting...
06:26:31 (2717): wrapper (7.17.26016): starting
06:26:31 (2717): wrapper (7.17.26016): starting
06:26:31 (2717): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:40:04 (2717): cmdock exited; CPU time 648.281658
06:40:04 (2717): called boinc_finish(0)

</stderr_txt>
]]>