Task 82091721

Name	corona_RdRp_v2_sidock_01767844_r1_s-20_0
Workunit	53492742
Created	21 Jun 2024, 16:15:27 UTC
Sent	25 Jun 2024, 13:30:09 UTC
Report deadline	1 Jul 2024, 13:30:09 UTC
Received	2 Jul 2024, 8:48:46 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	56209
Run time	23 hours 7 min 30 sec
CPU time	23 hours 6 min 26 sec
Validate state	Valid
Credit	2,075.98
Device peak FLOPS	7.31 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.54 MB
Peak swap size	219.87 MB
Peak disk usage	20.63 MB
Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:30:14 (141538): wrapper (7.17.26016): starting
09:30:14 (141538): wrapper (7.17.26016): starting
09:30:14 (141538): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5559f5e3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f476c43e6f0]
/lib64/libc.so.6(free+0x1e)[0x7f476c499cfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5559f5e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5559f5e7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f476c43e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f476c4d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f476c4d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f476c504b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5559f5e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5559f5e1e784]
/lib64/libc.so.6(+0x29590)[0x7f476c429590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f476c429640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5559f5e1aa3a]

Exiting...
21:00:13 (2510): wrapper (7.17.26016): starting
21:00:13 (2510): wrapper (7.17.26016): starting
21:00:13 (2510): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5618a6c3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fec23e3e6f0]
/lib64/libc.so.6(free+0x1e)[0x7fec23e99cfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5618a6c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5618a6c7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fec23e3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fec23ed4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fec23ed8c87]
/lib64/libc.so.6(usleep+0x49)[0x7fec23f04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5618a6c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5618a6c1e784]
/lib64/libc.so.6(+0x29590)[0x7fec23e29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fec23e29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5618a6c1aa3a]

Exiting...
22:01:08 (2523): wrapper (7.17.26016): starting
22:01:08 (2523): wrapper (7.17.26016): starting
22:01:08 (2523): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b5f603ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f438ee3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f438ee8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f438ee3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f438ee287f3]
/lib64/libc.so.6(+0x29130)[0x7f438ee29130]
/lib64/libc.so.6(+0x959f7)[0x7f438ee959f7]
/lib64/libc.so.6(+0x972ac)[0x7f438ee972ac]
/lib64/libc.so.6(free+0x55)[0x7f438ee99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b5f605c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b5f607b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f438ee3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f438eed4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f438eed8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f438ef04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b5f6051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b5f601e784]
/lib64/libc.so.6(+0x29590)[0x7f438ee29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f438ee29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b5f601aa3a]

Exiting...
06:11:46 (2733): wrapper (7.17.26016): starting
06:11:46 (2733): wrapper (7.17.26016): starting
06:11:46 (2733): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x562302a3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f0d5bc3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f0d5bc8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f0d5bc3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f0d5bc287f3]
/lib64/libc.so.6(+0x29130)[0x7f0d5bc29130]
/lib64/libc.so.6(+0x959f7)[0x7f0d5bc959f7]
/lib64/libc.so.6(+0x972ac)[0x7f0d5bc972ac]
/lib64/libc.so.6(free+0x55)[0x7f0d5bc99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x562302a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x562302a7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f0d5bc3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f0d5bcd4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f0d5bcd8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f0d5bd04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x562302a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x562302a1e784]
/lib64/libc.so.6(+0x29590)[0x7f0d5bc29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f0d5bc29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x562302a1aa3a]

Exiting...
11:21:58 (2721): wrapper (7.17.26016): starting
11:21:59 (2721): wrapper (7.17.26016): starting
11:21:59 (2721): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55fcc083ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f6d34e3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f6d34e8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f6d34e3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f6d34e287f3]
/lib64/libc.so.6(+0x29130)[0x7f6d34e29130]
/lib64/libc.so.6(+0x959f7)[0x7f6d34e959f7]
/lib64/libc.so.6(+0x972ac)[0x7f6d34e972ac]
/lib64/libc.so.6(free+0x55)[0x7f6d34e99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55fcc085c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55fcc087b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f6d34e3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f6d34ed4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f6d34ed8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f6d34f04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55fcc0851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55fcc081e784]
/lib64/libc.so.6(+0x29590)[0x7f6d34e29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f6d34e29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55fcc081aa3a]

Exiting...
04:13:23 (2502): wrapper (7.17.26016): starting
04:13:23 (2502): wrapper (7.17.26016): starting
04:13:23 (2502): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
04:48:32 (2502): cmdock exited; CPU time 1689.099885
04:48:32 (2502): called boinc_finish(0)

</stderr_txt>
]]>