Task 82091702

Name	corona_RdRp_v2_sidock_01767834_r1_s-20_0
Workunit	53492722
Created	21 Jun 2024, 16:15:26 UTC
Sent	25 Jun 2024, 13:13:18 UTC
Report deadline	1 Jul 2024, 13:13:18 UTC
Received	30 Jun 2024, 20:45:57 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	56209
Run time	21 hours 50 min 13 sec
CPU time	21 hours 48 min 44 sec
Validate state	Valid
Credit	1,900.66
Device peak FLOPS	7.31 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.11 MB
Peak swap size	219.87 MB
Peak disk usage	20.55 MB
Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:13:22 (141503): wrapper (7.17.26016): starting
09:13:22 (141503): wrapper (7.17.26016): starting
09:13:22 (141503): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558ea263ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fde4983e6f0]
/lib64/libc.so.6(free+0x1e)[0x7fde49899cfe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558ea265c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558ea267b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fde4983e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fde498d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fde498d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7fde49904b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558ea2651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558ea261e784]
/lib64/libc.so.6(+0x29590)[0x7fde49829590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fde49829640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558ea261aa3a]

Exiting...
21:00:13 (2508): wrapper (7.17.26016): starting
21:00:13 (2508): wrapper (7.17.26016): starting
21:00:13 (2508): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55846e43ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f4557c3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f4557c8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f4557c3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f4557c287f3]
/lib64/libc.so.6(+0x29130)[0x7f4557c29130]
/lib64/libc.so.6(+0x959f7)[0x7f4557c959f7]
/lib64/libc.so.6(+0x972ac)[0x7f4557c972ac]
/lib64/libc.so.6(free+0x55)[0x7f4557c99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55846e45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55846e47b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f4557c3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f4557cd4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f4557cd8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f4557d04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55846e451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55846e41e784]
/lib64/libc.so.6(+0x29590)[0x7f4557c29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f4557c29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55846e41aa3a]

Exiting...
22:01:08 (2522): wrapper (7.17.26016): starting
22:01:08 (2522): wrapper (7.17.26016): starting
22:01:08 (2522): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ccb463ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7ff1e643e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7ff1e648b94c]
/lib64/libc.so.6(raise+0x16)[0x7ff1e643e646]
/lib64/libc.so.6(abort+0xd3)[0x7ff1e64287f3]
/lib64/libc.so.6(+0x29130)[0x7ff1e6429130]
/lib64/libc.so.6(+0x959f7)[0x7ff1e64959f7]
/lib64/libc.so.6(+0x972ac)[0x7ff1e64972ac]
/lib64/libc.so.6(free+0x55)[0x7ff1e6499d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ccb465c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ccb467b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7ff1e643e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7ff1e64d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7ff1e64d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7ff1e6504b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ccb4651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ccb461e784]
/lib64/libc.so.6(+0x29590)[0x7ff1e6429590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7ff1e6429640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ccb461aa3a]

Exiting...
06:11:46 (2731): wrapper (7.17.26016): starting
06:11:46 (2731): wrapper (7.17.26016): starting
06:11:46 (2731): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5641bee3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f53a863e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f53a868b94c]
/lib64/libc.so.6(raise+0x16)[0x7f53a863e646]
/lib64/libc.so.6(abort+0xd3)[0x7f53a86287f3]
/lib64/libc.so.6(+0x29130)[0x7f53a8629130]
/lib64/libc.so.6(+0x959f7)[0x7f53a86959f7]
/lib64/libc.so.6(+0x972ac)[0x7f53a86972ac]
/lib64/libc.so.6(free+0x55)[0x7f53a8699d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5641bee5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5641bee7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f53a863e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f53a86d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f53a86d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f53a8704b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5641bee51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5641bee1e784]
/lib64/libc.so.6(+0x29590)[0x7f53a8629590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f53a8629640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5641bee1aa3a]

Exiting...
11:21:58 (2710): wrapper (7.17.26016): starting
11:21:59 (2710): wrapper (7.17.26016): starting
11:21:59 (2710): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:45:48 (2710): cmdock exited; CPU time 15526.647081
16:45:48 (2710): called boinc_finish(0)

</stderr_txt>
]]>