Task 82090335

Name corona_RdRp_v2_sidock_01767160_r1_s-20_0
Workunit 53491374
Created 21 Jun 2024, 16:14:01 UTC
Sent 25 Jun 2024, 5:15:35 UTC
Report deadline 1 Jul 2024, 5:15:35 UTC
Received 28 Jun 2024, 3:00:06 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 19139
Run time 2 days 4 hours 37 min 23 sec
CPU time 2 days 4 hours 0 min 4 sec
Validate state Valid
Credit 1,017.35
Device peak FLOPS 3.76 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.48 MB
Peak swap size 201.12 MB
Peak disk usage 20.38 MB

Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
05:20:08 (229096): wrapper (7.17.26016): starting
05:20:08 (229096): wrapper (7.17.26016): starting
05:20:08 (229096): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (13 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x561397fd2f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x14420)[0x7f08575b5420]
/lib/x86_64-linux-gnu/libc.so.6(cfree+0x20)[0x7f08574496f0]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x561397fef3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56139800e8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x7f08573f2090]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f085748c23f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f0857491ec7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f08574c4a7f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x561397fe4adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x561397fb1784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f08573d3083]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x561397fada3a]

Exiting...
19:29:02 (2168): wrapper (7.17.26016): starting
19:29:02 (2168): wrapper (7.17.26016): starting
19:29:02 (2168): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:59:51 (2168): cmdock exited; CPU time 137156.579518
09:59:51 (2168): called boinc_finish(0)

</stderr_txt>
]]>


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