Task 82089705

Name	corona_RdRp_v2_sidock_01766855_r2_s-20_0
Workunit	53490765
Created	21 Jun 2024, 16:13:26 UTC
Sent	25 Jun 2024, 2:20:40 UTC
Report deadline	1 Jul 2024, 2:20:40 UTC
Received	27 Jun 2024, 7:39:00 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	55179
Run time	2 days 3 hours 48 min 19 sec
CPU time	2 days 3 hours 33 min 45 sec
Validate state	Valid
Credit	1,352.63
Device peak FLOPS	5.77 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.11 MB
Peak swap size	201.23 MB
Peak disk usage	20.60 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
06:08:40 (350648): wrapper (7.17.26016): starting
06:08:40 (350648): wrapper (7.17.26016): starting
06:08:40 (350648): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x600da0c3ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x745f22c0b4b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x745f22c77ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x600da0c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x600da0c7b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x745f22c0b4b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x745f22ca7f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x745f22cb5447]
/usr/lib/libc.so.6(usleep+0x47)[0x745f22ce5977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x600da0c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x600da0c1e784]
/usr/lib/libc.so.6(+0x25f8e)[0x745f22beff8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x745f22bf004a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x600da0c1aa3a]

Exiting...
08:03:11 (4934): wrapper (7.17.26016): starting
08:03:11 (4934): wrapper (7.17.26016): starting
08:03:11 (4934): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5c6575e3ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x71175cd474b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x71175cdb3ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5c6575e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5c6575e7b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x71175cd474b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x71175cde3f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x71175cdf1447]
/usr/lib/libc.so.6(usleep+0x47)[0x71175ce21977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5c6575e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5c6575e1e784]
/usr/lib/libc.so.6(+0x25f8e)[0x71175cd2bf8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x71175cd2c04a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5c6575e1aa3a]

Exiting...
17:02:51 (4713): wrapper (7.17.26016): starting
17:02:51 (4713): wrapper (7.17.26016): starting
17:02:51 (4713): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5fc68b63ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x759b164594b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x759b164c5ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5fc68b65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5fc68b67b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x759b164594b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x759b164f5f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x759b16503447]
/usr/lib/libc.so.6(usleep+0x47)[0x759b16533977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5fc68b651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5fc68b61e784]
/usr/lib/libc.so.6(+0x25f8e)[0x759b1643df8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x759b1643e04a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5fc68b61aa3a]

Exiting...
08:12:12 (4937): wrapper (7.17.26016): starting
08:12:12 (4937): wrapper (7.17.26016): starting
08:12:12 (4937): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62948583ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x75de595484b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x75de595b4ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62948585c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62948587b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x75de595484b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x75de595e4f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x75de595f2447]
/usr/lib/libc.so.6(usleep+0x47)[0x75de59622977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x629485851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62948581e784]
/usr/lib/libc.so.6(+0x25f8e)[0x75de5952cf8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x75de5952d04a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62948581aa3a]

Exiting...
16:55:22 (4721): wrapper (7.17.26016): starting
16:55:22 (4721): wrapper (7.17.26016): starting
16:55:22 (4721): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55cc39c3ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x7bc6cd4774b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x7bc6cd4e3ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55cc39c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55cc39c7b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x7bc6cd4774b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x7bc6cd513f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7bc6cd521447]
/usr/lib/libc.so.6(usleep+0x47)[0x7bc6cd551977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55cc39c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55cc39c1e784]
/usr/lib/libc.so.6(+0x25f8e)[0x7bc6cd45bf8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x7bc6cd45c04a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55cc39c1aa3a]

Exiting...
08:16:51 (4928): wrapper (7.17.26016): starting
08:16:52 (4928): wrapper (7.17.26016): starting
08:16:52 (4928): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:38:48 (4928): cmdock exited; CPU time 8465.921609
10:38:48 (4928): called boinc_finish(0)

</stderr_txt>
]]>