Task 82085341

Name	corona_RdRp_v2_sidock_01764670_r2_s-20_0
Workunit	53486395
Created	21 Jun 2024, 16:09:05 UTC
Sent	24 Jun 2024, 2:24:50 UTC
Report deadline	30 Jun 2024, 2:24:50 UTC
Received	26 Jun 2024, 11:54:32 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	55179
Run time	2 days 5 hours 45 min 35 sec
CPU time	2 days 5 hours 30 min 55 sec
Validate state	Valid
Credit	1,400.62
Device peak FLOPS	5.77 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.49 MB
Peak swap size	200.85 MB
Peak disk usage	20.68 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
08:06:15 (34076): wrapper (7.17.26016): starting
08:06:15 (34076): wrapper (7.17.26016): starting
08:06:15 (34076): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57138463ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x7e39444984b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x7e3944504ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57138465c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57138467b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x7e39444984b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x7e3944534f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7e3944542447]
/usr/lib/libc.so.6(usleep+0x47)[0x7e3944572977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x571384651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57138461e784]
/usr/lib/libc.so.6(+0x25f8e)[0x7e394447cf8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x7e394447d04a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57138461aa3a]

Exiting...
12:01:52 (4730): wrapper (7.17.26016): starting
12:01:52 (4730): wrapper (7.17.26016): starting
12:01:52 (4730): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x626bc903ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x7616f84394b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x7616f84a5ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x626bc905c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x626bc907b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x7616f84394b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x7616f84d5f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7616f84e3447]
/usr/lib/libc.so.6(usleep+0x47)[0x7616f8513977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x626bc9051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x626bc901e784]
/usr/lib/libc.so.6(+0x25f8e)[0x7616f841df8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x7616f841e04a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x626bc901aa3a]

Exiting...
14:44:56 (4901): wrapper (7.17.26016): starting
14:44:56 (4901): wrapper (7.17.26016): starting
14:44:56 (4901): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x65291ce3ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x7472c82224b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x7472c828eede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x65291ce5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x65291ce7b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x7472c82224b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x7472c82bef85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7472c82cc447]
/usr/lib/libc.so.6(usleep+0x47)[0x7472c82fc977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x65291ce51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x65291ce1e784]
/usr/lib/libc.so.6(+0x25f8e)[0x7472c8206f8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x7472c820704a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x65291ce1aa3a]

Exiting...
08:03:11 (4932): wrapper (7.17.26016): starting
08:03:11 (4932): wrapper (7.17.26016): starting
08:03:11 (4932): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5921bf03ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x782c0bc244b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x782c0bc90ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5921bf05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5921bf07b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x782c0bc244b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x782c0bcc0f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x782c0bcce447]
/usr/lib/libc.so.6(usleep+0x47)[0x782c0bcfe977]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5921bf051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5921bf01e784]
/usr/lib/libc.so.6(+0x25f8e)[0x782c0bc08f8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x782c0bc0904a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5921bf01aa3a]

Exiting...
17:02:51 (4711): wrapper (7.17.26016): starting
17:02:51 (4711): wrapper (7.17.26016): starting
17:02:51 (4711): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ffa8e3ff8c]
/usr/lib/libc.so.6(+0x414b0)[0x7514ed2094b0]
/usr/lib/libc.so.6(__libc_free+0x1e)[0x7514ed275ede]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ffa8e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ffa8e7b8e4]
/usr/lib/libc.so.6(+0x414b0)[0x7514ed2094b0]
/usr/lib/libc.so.6(clock_nanosleep+0x65)[0x7514ed2a5f85]
/usr/lib/libc.so.6(nanosleep+0x17)[0x7514ed2b3447]
/usr/lib/libc.so.6(sleep+0x3c)[0x7514ed2ca15c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x55ffa8e51a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ffa8e1e784]
/usr/lib/libc.so.6(+0x25f8e)[0x7514ed1edf8e]
/usr/lib/libc.so.6(__libc_start_main+0x8a)[0x7514ed1ee04a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ffa8e1aa3a]

Exiting...
08:12:12 (4936): wrapper (7.17.26016): starting
08:12:12 (4936): wrapper (7.17.26016): starting
08:12:12 (4936): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:54:18 (4936): cmdock exited; CPU time 23970.927051
14:54:18 (4936): called boinc_finish(0)

</stderr_txt>
]]>