Task 82084096

Name corona_RdRp_v2_sidock_01764031_r2_s-20_0
Workunit 53485117
Created 21 Jun 2024, 16:07:53 UTC
Sent 23 Jun 2024, 19:51:54 UTC
Report deadline 29 Jun 2024, 19:51:54 UTC
Received 26 Jun 2024, 18:03:18 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 7 hours 32 min 21 sec
CPU time 1 days 7 hours 29 min 53 sec
Validate state Valid
Credit 1,233.74
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.14 MB
Peak swap size 200.79 MB
Peak disk usage 20.55 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
01:25:49 (51887): wrapper (7.17.26016): starting
01:25:50 (51887): wrapper (7.17.26016): starting
01:25:50 (51887): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558803ec9f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7fadbcc5c3c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fadbca9903b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fadbca78859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7fadbcae329e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7fadbcaeb32c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7fadbcaecb5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558803ee63dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558803f058e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7fadbca990c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fadbcb3326f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fadbcb38ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fadbcb6b88f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558803edbadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558803ea8784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fadbca7a0b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558803ea4a3a]

Exiting...
15:05:11 (3623): wrapper (7.17.26016): starting
15:05:12 (3623): wrapper (7.17.26016): starting
15:05:12 (3623): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:03:06 (3623): cmdock exited; CPU time 107718.091861
21:03:06 (3623): called boinc_finish(0)

</stderr_txt>
]]>


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