Task 82082376

Name corona_RdRp_v2_sidock_01763171_r1_s-20_0
Workunit 53483396
Created 21 Jun 2024, 16:06:17 UTC
Sent 23 Jun 2024, 10:54:12 UTC
Report deadline 29 Jun 2024, 10:54:12 UTC
Received 23 Jun 2024, 17:42:54 UTC
Server state Over
Outcome Validate error
Client state Done
Exit status 0 (0x00000000)
Computer ID 24540
Run time 11 sec
CPU time 5 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 3.63 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 29.13 MB
Peak swap size 37.13 MB
Peak disk usage 20.58 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
12:55:15 (4428): wrapper (7.17.26016): starting
12:55:15 (4428): wrapper (7.17.26016): starting
12:55:15 (4428): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55c18b63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f63ae191520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7f63ae1f43fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55c18b65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55c18b67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f63ae191520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f63ae2347f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f63ae239677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f63ae26af2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55c18b651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55c18b61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f63ae178d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f63ae178e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55c18b61aa3a]

Exiting...
19:41:59 (4011): wrapper (7.17.26016): starting
19:41:59 (4011): wrapper (7.17.26016): starting
19:41:59 (4011): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:42:06 (4011): cmdock exited; CPU time 5.346867
19:42:06 (4011): called boinc_finish(0)

</stderr_txt>
]]>


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