Task 82081446

Name corona_RdRp_v2_sidock_01762719_r1_s-20_0
Workunit 53482492
Created 21 Jun 2024, 16:05:20 UTC
Sent 23 Jun 2024, 5:40:08 UTC
Report deadline 29 Jun 2024, 5:40:08 UTC
Received 26 Jun 2024, 2:42:24 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 6 hours 57 min 9 sec
CPU time 1 days 6 hours 54 min 54 sec
Validate state Valid
Credit 1,210.94
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.68 MB
Peak swap size 201.23 MB
Peak disk usage 20.38 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
10:44:54 (31696): wrapper (7.17.26016): starting
10:44:55 (31696): wrapper (7.17.26016): starting
10:44:55 (31696): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5636e9561f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7fda57b213c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fda5795e03b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fda5793d859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7fda579a829e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7fda579b032c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7fda579b1b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5636e957e3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5636e959d8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7fda5795e0c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fda579f826f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fda579fdef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fda57a3088f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5636e9573adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5636e9540784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fda5793f0b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5636e953ca3a]

Exiting...
15:05:11 (3620): wrapper (7.17.26016): starting
15:05:12 (3620): wrapper (7.17.26016): starting
15:05:12 (3620): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:42:12 (3620): cmdock exited; CPU time 52549.624642
05:42:12 (3620): called boinc_finish(0)

</stderr_txt>
]]>


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