Task 82077707

Name	corona_RdRp_v2_sidock_01760846_r2_s-20_0
Workunit	53478747
Created	21 Jun 2024, 16:01:43 UTC
Sent	22 Jun 2024, 4:56:54 UTC
Report deadline	28 Jun 2024, 4:56:54 UTC
Received	23 Jun 2024, 7:32:55 UTC
Server state	Over
Outcome	Computation error
Client state	Aborted by user
Exit status	203 (0x000000CB) EXIT_ABORTED_VIA_GUI
Computer ID	36470
Run time	23 hours 13 min 36 sec
CPU time	23 hours 11 min 53 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	6.12 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.13 MB
Peak swap size	199.93 MB
Peak disk usage	20.33 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<message>
aborted by user</message>
<stderr_txt>
06:57:00 (2594): wrapper (7.17.26016): starting
06:57:00 (2594): wrapper (7.17.26016): starting
06:57:00 (2594): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55f4c203ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f6fc0f79520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7f6fc0fdc3fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55f4c205c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55f4c207b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f6fc0f79520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f6fc101c7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f6fc1021677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f6fc1052f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55f4c2051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55f4c201e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f6fc0f60d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f6fc0f60e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55f4c201aa3a]

Exiting...
12:26:45 (1739): wrapper (7.17.26016): starting
12:26:45 (1739): wrapper (7.17.26016): starting
12:26:45 (1739): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56128b23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f18cf8e7520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7f18cf94a3fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56128b25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56128b27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f18cf8e7520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f18cf98a7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f18cf98f677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f18cf9c0f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56128b251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56128b21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f18cf8ced90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f18cf8cee40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56128b21aa3a]

Exiting...
08:05:54 (1748): wrapper (7.17.26016): starting
08:05:54 (1748): wrapper (7.17.26016): starting
08:05:54 (1748): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x556bb9a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7facd777c520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7facd77df3fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x556bb9a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x556bb9a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7facd777c520]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x556bb9a3aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7facd777c520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7facd781f7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7facd7824677]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3e)[0x7facd78245ae]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x556bb9a51a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x556bb9a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7facd7763d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7facd7763e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x556bb9a1aa3a]

Exiting...
08:08:05 (1739): wrapper (7.17.26016): starting
08:08:05 (1739): wrapper (7.17.26016): starting
08:08:05 (1739): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)

</stderr_txt>
]]>