Task 82075807

Name corona_RdRp_v2_sidock_01757665_r1_s-20_1
Workunit 53472384
Created 21 Jun 2024, 11:08:41 UTC
Sent 21 Jun 2024, 19:14:40 UTC
Report deadline 27 Jun 2024, 19:14:40 UTC
Received 23 Jun 2024, 14:58:23 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 16 hours 54 min 27 sec
CPU time 1 days 16 hours 51 min 50 sec
Validate state Valid
Credit 1,680.58
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.14 MB
Peak swap size 200.86 MB
Peak disk usage 20.63 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
00:07:09 (31297): wrapper (7.17.26016): starting
00:07:09 (31297): wrapper (7.17.26016): starting
00:07:09 (31297): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ab6c757f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7fcffff483c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fcfffd8503b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fcfffd64859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7fcfffdcf29e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7fcfffdd732c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7fcfffdd8b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ab6c7743dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ab6c7938e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7fcfffd850c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fcfffe1f26f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fcfffe24ef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fcfffe5788f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ab6c769adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ab6c736784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fcfffd660b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ab6c732a3a]

Exiting...
00:21:58 (13228): wrapper (7.17.26016): starting
00:21:59 (13228): wrapper (7.17.26016): starting
00:21:59 (13228): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:58:12 (13228): cmdock exited; CPU time 63292.657725
17:58:12 (13228): called boinc_finish(0)

</stderr_txt>
]]>


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