Name | corona_RdRp_v2_sidock_01752256_r2_s-20_1 |
Workunit | 53461567 |
Created | 20 Jun 2024, 7:59:43 UTC |
Sent | 21 Jun 2024, 15:38:48 UTC |
Report deadline | 27 Jun 2024, 15:38:48 UTC |
Received | 6 Jul 2024, 0:21:04 UTC |
Server state | Over |
Outcome | Success |
Client state | Done |
Exit status | 0 (0x00000000) |
Computer ID | 56875 |
Run time | 3 days 6 hours 20 min 45 sec |
CPU time | 2 days 19 hours 38 min 19 sec |
Validate state | Task was reported too late to validate |
Credit | 0.00 |
Device peak FLOPS | 3.55 GFLOPS |
Application version | CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu |
Peak working set size | 193.59 MB |
Peak swap size | 200.89 MB |
Peak disk usage | 20.52 MB |
<core_client_version>7.18.1</core_client_version> <![CDATA[ <stderr_txt> 10:38:53 (3779): wrapper (7.17.26016): starting 10:38:53 (3779): wrapper (7.17.26016): starting 10:38:53 (3779): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 18:36:22 (3162): wrapper (7.17.26016): starting 18:36:22 (3162): wrapper (7.17.26016): starting 18:36:22 (3162): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6087e103ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x78422ec42520] /lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x78422eca53fe] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6087e105c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6087e107b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x78422ec42520] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x78422ece57f8] /lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x78422ecea677] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x78422ed1bf2f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6087e1051adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6087e101e784] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x78422ec29d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x78422ec29e40] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6087e101aa3a] Exiting... 07:20:11 (3182): wrapper (7.17.26016): starting 07:20:11 (3182): wrapper (7.17.26016): starting 07:20:11 (3182): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62d2dd83ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7faf80a42520] /lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7faf80aa53fe] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62d2dd85c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62d2dd87b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7faf80a42520] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7faf80ae57f8] /lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7faf80aea677] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7faf80b1bf2f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62d2dd851adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62d2dd81e784] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7faf80a29d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7faf80a29e40] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62d2dd81aa3a] Exiting... 07:57:05 (3278): wrapper (7.17.26016): starting 07:57:05 (3278): wrapper (7.17.26016): starting 07:57:05 (3278): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56151e43ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x736fbd442520] /lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x736fbd4a53fe] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56151e45c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56151e47b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x736fbd442520] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x736fbd4e57f8] /lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x736fbd4ea677] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x736fbd51bf2f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56151e451adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56151e41e784] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x736fbd429d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x736fbd429e40] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56151e41aa3a] Exiting... 07:31:05 (3211): wrapper (7.17.26016): starting 07:31:05 (3211): wrapper (7.17.26016): starting 07:31:05 (3211): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x601a90a3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x790faec42520] /lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x790faeca53fe] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x601a90a5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x601a90a7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x790faec42520] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x790faece57f8] /lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x790faecea677] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x790faed1bf2f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x601a90a51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x601a90a1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x790faec29d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x790faec29e40] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x601a90a1aa3a] Exiting... 07:50:14 (3263): wrapper (7.17.26016): starting 07:50:14 (3263): wrapper (7.17.26016): starting 07:50:14 (3263): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63434e03ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x74ef9ae42520] /lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x74ef9aea53fe] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63434e05c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63434e07b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x74ef9ae42520] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x74ef9aee57f8] /lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x74ef9aeea677] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x74ef9af1bf2f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x63434e051adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63434e01e784] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x74ef9ae29d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x74ef9ae29e40] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63434e01aa3a] Exiting... 07:42:41 (3159): wrapper (7.17.26016): starting 07:42:41 (3159): wrapper (7.17.26016): starting 07:42:41 (3159): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62293fa3ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x793391442520] /lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7933914a53fe] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62293fa5c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62293fa7b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x793391442520] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7933914e57f8] /lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7933914ea677] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x79339151bf2f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62293fa51adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62293fa1e784] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x793391429d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x793391429e40] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62293fa1aa3a] Exiting... 07:22:16 (3196): wrapper (7.17.26016): starting 07:22:17 (3196): wrapper (7.17.26016): starting 07:22:17 (3196): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6177ec63ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7525f7c42520] /lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7525f7ca53fe] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6177ec65c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6177ec67b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7525f7c42520] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7525f7ce57f8] /lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7525f7cea677] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7525f7d1bf2f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6177ec651adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6177ec61e784] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7525f7c29d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7525f7c29e40] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6177ec61aa3a] Exiting... 06:13:39 (3568): wrapper (7.17.26016): starting 06:13:39 (3568): wrapper (7.17.26016): starting 06:13:39 (3568): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a428343ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7df8e7442520] /lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7df8e74a53fe] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a428345c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a428347b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7df8e7442520] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7df8e74e57f8] /lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7df8e74ea677] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7df8e751bf2f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a4283451adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a428341e784] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7df8e7429d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7df8e7429e40] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a428341aa3a] Exiting... 10:28:08 (3667): wrapper (7.17.26016): starting 10:28:08 (3667): wrapper (7.17.26016): starting 10:28:08 (3667): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) SIGSEGV: segmentation violation Stack trace (14 frames): ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5fc7ca23ff8c] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7eedf3642520] /lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7eedf36a53fe] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5fc7ca25c3dd] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5fc7ca27b8e4] /lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7eedf3642520] /lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7eedf36e57f8] /lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7eedf36ea677] /lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7eedf371bf2f] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5fc7ca251adf] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5fc7ca21e784] /lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7eedf3629d90] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7eedf3629e40] ../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5fc7ca21aa3a] Exiting... 09:55:47 (3204): wrapper (7.17.26016): starting 09:55:47 (3204): wrapper (7.17.26016): starting 09:55:47 (3204): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 11:09:29 (3238): wrapper (7.17.26016): starting 11:09:29 (3238): wrapper (7.17.26016): starting 11:09:29 (3238): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out) 19:20:50 (3238): cmdock exited; CPU time 14516.397411 19:20:50 (3238): called boinc_finish(0) </stderr_txt> ]]>
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