Task 82074726

Name corona_RdRp_v2_sidock_01752256_r2_s-20_1
Workunit 53461567
Created 20 Jun 2024, 7:59:43 UTC
Sent 21 Jun 2024, 15:38:48 UTC
Report deadline 27 Jun 2024, 15:38:48 UTC
Received 6 Jul 2024, 0:21:04 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 56875
Run time 3 days 6 hours 20 min 45 sec
CPU time 2 days 19 hours 38 min 19 sec
Validate state Task was reported too late to validate
Credit 0.00
Device peak FLOPS 3.55 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.59 MB
Peak swap size 200.89 MB
Peak disk usage 20.52 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
10:38:53 (3779): wrapper (7.17.26016): starting
10:38:53 (3779): wrapper (7.17.26016): starting
10:38:53 (3779): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:36:22 (3162): wrapper (7.17.26016): starting
18:36:22 (3162): wrapper (7.17.26016): starting
18:36:22 (3162): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6087e103ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x78422ec42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x78422eca53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6087e105c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6087e107b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x78422ec42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x78422ece57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x78422ecea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x78422ed1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6087e1051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6087e101e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x78422ec29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x78422ec29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6087e101aa3a]

Exiting...
07:20:11 (3182): wrapper (7.17.26016): starting
07:20:11 (3182): wrapper (7.17.26016): starting
07:20:11 (3182): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62d2dd83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7faf80a42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7faf80aa53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62d2dd85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62d2dd87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7faf80a42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7faf80ae57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7faf80aea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7faf80b1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62d2dd851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62d2dd81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7faf80a29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7faf80a29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62d2dd81aa3a]

Exiting...
07:57:05 (3278): wrapper (7.17.26016): starting
07:57:05 (3278): wrapper (7.17.26016): starting
07:57:05 (3278): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56151e43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x736fbd442520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x736fbd4a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56151e45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56151e47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x736fbd442520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x736fbd4e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x736fbd4ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x736fbd51bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x56151e451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56151e41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x736fbd429d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x736fbd429e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56151e41aa3a]

Exiting...
07:31:05 (3211): wrapper (7.17.26016): starting
07:31:05 (3211): wrapper (7.17.26016): starting
07:31:05 (3211): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x601a90a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x790faec42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x790faeca53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x601a90a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x601a90a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x790faec42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x790faece57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x790faecea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x790faed1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x601a90a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x601a90a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x790faec29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x790faec29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x601a90a1aa3a]

Exiting...
07:50:14 (3263): wrapper (7.17.26016): starting
07:50:14 (3263): wrapper (7.17.26016): starting
07:50:14 (3263): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63434e03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x74ef9ae42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x74ef9aea53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63434e05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63434e07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x74ef9ae42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x74ef9aee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x74ef9aeea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x74ef9af1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x63434e051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63434e01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x74ef9ae29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x74ef9ae29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63434e01aa3a]

Exiting...
07:42:41 (3159): wrapper (7.17.26016): starting
07:42:41 (3159): wrapper (7.17.26016): starting
07:42:41 (3159): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62293fa3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x793391442520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7933914a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62293fa5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62293fa7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x793391442520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7933914e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7933914ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x79339151bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x62293fa51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62293fa1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x793391429d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x793391429e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62293fa1aa3a]

Exiting...
07:22:16 (3196): wrapper (7.17.26016): starting
07:22:17 (3196): wrapper (7.17.26016): starting
07:22:17 (3196): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x6177ec63ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7525f7c42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7525f7ca53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x6177ec65c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x6177ec67b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7525f7c42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7525f7ce57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7525f7cea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7525f7d1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x6177ec651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x6177ec61e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7525f7c29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7525f7c29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x6177ec61aa3a]

Exiting...
06:13:39 (3568): wrapper (7.17.26016): starting
06:13:39 (3568): wrapper (7.17.26016): starting
06:13:39 (3568): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5a428343ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7df8e7442520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7df8e74a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5a428345c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5a428347b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7df8e7442520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7df8e74e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7df8e74ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7df8e751bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5a4283451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5a428341e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7df8e7429d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7df8e7429e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5a428341aa3a]

Exiting...
10:28:08 (3667): wrapper (7.17.26016): starting
10:28:08 (3667): wrapper (7.17.26016): starting
10:28:08 (3667): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5fc7ca23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7eedf3642520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7eedf36a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5fc7ca25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5fc7ca27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7eedf3642520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7eedf36e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7eedf36ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7eedf371bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5fc7ca251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5fc7ca21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7eedf3629d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7eedf3629e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5fc7ca21aa3a]

Exiting...
09:55:47 (3204): wrapper (7.17.26016): starting
09:55:47 (3204): wrapper (7.17.26016): starting
09:55:47 (3204): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
11:09:29 (3238): wrapper (7.17.26016): starting
11:09:29 (3238): wrapper (7.17.26016): starting
11:09:29 (3238): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/8/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
19:20:50 (3238): cmdock exited; CPU time 14516.397411
19:20:50 (3238): called boinc_finish(0)

</stderr_txt>
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