Task 82068481

Name	corona_RdRp_v2_sidock_01729605_r1_s-20_1
Workunit	53396264
Created	15 Jun 2024, 18:07:23 UTC
Sent	20 Jun 2024, 23:23:12 UTC
Report deadline	26 Jun 2024, 23:23:12 UTC
Received	24 Jun 2024, 20:18:09 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	50430
Run time	1 days 14 hours 36 min 4 sec
CPU time	1 days 14 hours 30 min 54 sec
Validate state	Valid
Credit	1,392.66
Device peak FLOPS	6.99 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.29 MB
Peak swap size	201.21 MB
Peak disk usage	20.53 MB
Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
06:47:55 (1785451): wrapper (7.17.26016): starting
06:47:55 (1785451): wrapper (7.17.26016): starting
06:47:55 (1785451): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f215c83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7a8f36642520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7a8f366a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f215c85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f215c87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7a8f36642520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7a8f366e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7a8f366ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7a8f3671bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f215c851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f215c81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7a8f36629d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7a8f36629e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f215c81aa3a]

Exiting...
08:00:04 (1789543): wrapper (7.17.26016): starting
08:00:04 (1789543): wrapper (7.17.26016): starting
08:00:04 (1789543): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5fbbf7c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x760f41442520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x760f414a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5fbbf7c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5fbbf7c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x760f41442520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x760f414e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x760f414ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x760f4151bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5fbbf7c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5fbbf7c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x760f41429d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x760f41429e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5fbbf7c1aa3a]

Exiting...
16:00:03 (1816695): wrapper (7.17.26016): starting
16:00:03 (1816695): wrapper (7.17.26016): starting
16:00:03 (1816695): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x578d3083ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x74c357a42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x74c357aa53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x578d3085c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x578d3087b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x74c357a42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x74c357ae57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x74c357aea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x74c357b1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x578d30851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x578d3081e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x74c357a29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x74c357a29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x578d3081aa3a]

Exiting...
00:00:06 (1843801): wrapper (7.17.26016): starting
00:00:06 (1843801): wrapper (7.17.26016): starting
00:00:06 (1843801): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x59a8dd83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7cf901042520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7cf9010a53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x59a8dd85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x59a8dd87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7cf901042520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7cf9010e57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7cf9010ea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7cf90111bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x59a8dd851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x59a8dd81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7cf901029d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7cf901029e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x59a8dd81aa3a]

Exiting...
08:00:03 (1871164): wrapper (7.17.26016): starting
08:00:03 (1871164): wrapper (7.17.26016): starting
08:00:03 (1871164): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5579fd23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x74cdaae42520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x74cdaaea53fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5579fd25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5579fd27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x74cdaae42520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x74cdaaee57f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x74cdaaeea677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x74cdaaf1bf2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5579fd251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5579fd21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x74cdaae29d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x74cdaae29e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5579fd21aa3a]

Exiting...
16:00:05 (1898672): wrapper (7.17.26016): starting
16:00:05 (1898672): wrapper (7.17.26016): starting
16:00:05 (1898672): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:17:59 (1898672): cmdock exited; CPU time 22254.833519
22:17:59 (1898672): called boinc_finish(0)

</stderr_txt>
]]>