Task 82066064

Name	corona_RdRp_v2_sidock_01724592_r1_s-20_2
Workunit	53386238
Created	14 Jun 2024, 7:12:12 UTC
Sent	20 Jun 2024, 16:34:09 UTC
Report deadline	26 Jun 2024, 16:34:09 UTC
Received	28 Jun 2024, 0:06:25 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54796
Run time	18 hours 0 min 14 sec
CPU time	18 hours 0 min 14 sec
Validate state	Valid
Credit	1,791.35
Device peak FLOPS	11.54 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.06 MB
Peak swap size	199.47 MB
Peak disk usage	20.82 MB
Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
20:26:27 (10391): wrapper (7.17.26016): starting
20:26:27 (10391): wrapper (7.17.26016): starting
20:26:27 (10391): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x561cbea3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fd60d5a3050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8ae2c)[0x7fd60d5f1e2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7fd60d5a2fb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fd60d58d472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f430)[0x7fd60d5e6430]
/lib/x86_64-linux-gnu/libc.so.6(+0x947aa)[0x7fd60d5fb7aa]
/lib/x86_64-linux-gnu/libc.so.6(+0x96534)[0x7fd60d5fd534]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7fd60d5ffe8f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x561cbea5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x561cbea7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fd60d5a3050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fd60d636485]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fd60d63ad93]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fd60d666185]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x561cbea51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x561cbea1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fd60d58e24a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fd60d58e305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x561cbea1aa3a]

Exiting...
00:15:48 (14293): wrapper (7.17.26016): starting
00:15:48 (14293): wrapper (7.17.26016): starting
00:15:48 (14293): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x557ee123ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f32bca5e050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8ae2c)[0x7f32bcaace2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f32bca5dfb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f32bca48472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f430)[0x7f32bcaa1430]
/lib/x86_64-linux-gnu/libc.so.6(+0x947aa)[0x7f32bcab67aa]
/lib/x86_64-linux-gnu/libc.so.6(+0x96534)[0x7f32bcab8534]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7f32bcabae8f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x557ee125c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x557ee127b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7f32bca5e050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f32bcaf1485]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f32bcaf5d93]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f32bcb21185]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x557ee1251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x557ee121e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7f32bca4924a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f32bca49305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x557ee121aa3a]

Exiting...
22:10:05 (4444): wrapper (7.17.26016): starting
22:10:06 (4444): wrapper (7.17.26016): starting
22:10:06 (4444): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5557d9a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fb8cac4e050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8ae2c)[0x7fb8cac9ce2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7fb8cac4dfb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fb8cac38472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f430)[0x7fb8cac91430]
/lib/x86_64-linux-gnu/libc.so.6(+0x947aa)[0x7fb8caca67aa]
/lib/x86_64-linux-gnu/libc.so.6(+0x96534)[0x7fb8caca8534]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7fb8cacaae8f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5557d9a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5557d9a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fb8cac4e050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fb8cace1485]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fb8cace5d93]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fb8cad11185]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5557d9a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5557d9a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fb8cac3924a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fb8cac39305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5557d9a1aa3a]

Exiting...
23:25:10 (4459): wrapper (7.17.26016): starting
23:25:10 (4459): wrapper (7.17.26016): starting
23:25:10 (4459): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55fb0323ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fe0b2250050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8ae2c)[0x7fe0b229ee2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7fe0b224ffb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fe0b223a472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f430)[0x7fe0b2293430]
/lib/x86_64-linux-gnu/libc.so.6(+0x947aa)[0x7fe0b22a87aa]
/lib/x86_64-linux-gnu/libc.so.6(+0x96534)[0x7fe0b22aa534]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7fe0b22ace8f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55fb0325c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55fb0327b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fe0b2250050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fe0b22e3485]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fe0b22e7d93]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3a)[0x7fe0b22e7cca]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x55fb03251a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55fb0321e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fe0b223b24a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fe0b223b305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55fb0321aa3a]

Exiting...
21:23:34 (4510): wrapper (7.17.26016): starting
21:23:34 (4510): wrapper (7.17.26016): starting
21:23:34 (4510): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x559d5a23ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fc18966e050]
/lib/x86_64-linux-gnu/libc.so.6(+0x8ae2c)[0x7fc1896bce2c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7fc18966dfb2]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fc189658472]
/lib/x86_64-linux-gnu/libc.so.6(+0x7f430)[0x7fc1896b1430]
/lib/x86_64-linux-gnu/libc.so.6(+0x947aa)[0x7fc1896c67aa]
/lib/x86_64-linux-gnu/libc.so.6(+0x96534)[0x7fc1896c8534]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7fc1896cae8f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x559d5a25c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x559d5a27b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c050)[0x7fc18966e050]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fc189701485]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7fc189705d93]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fc189731185]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x559d5a251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x559d5a21e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2724a)[0x7fc18965924a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fc189659305]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x559d5a21aa3a]

Exiting...
23:48:39 (4493): wrapper (7.17.26016): starting
23:48:39 (4493): wrapper (7.17.26016): starting
23:48:39 (4493): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/9/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:06:15 (4493): cmdock exited; CPU time 8307.849010
03:06:15 (4493): called boinc_finish(0)

</stderr_txt>
]]>