Task 82063517

Name	corona_RdRp_v2_sidock_01759056_r1_s-20_0
Workunit	53475166
Created	14 Jun 2024, 2:06:35 UTC
Sent	20 Jun 2024, 3:55:12 UTC
Report deadline	26 Jun 2024, 3:55:12 UTC
Received	23 Jun 2024, 19:09:30 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54280
Run time	3 days 14 hours 29 min 19 sec
CPU time	3 days 11 hours 22 min 14 sec
Validate state	Valid
Credit	1,242.43
Device peak FLOPS	3.47 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.24 MB
Peak swap size	201.20 MB
Peak disk usage	20.58 MB
Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
22:55:22 (573738): wrapper (7.17.26016): starting
22:55:22 (573738): wrapper (7.17.26016): starting
22:55:22 (573738): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5d12f1e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f04af245320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7f04af2add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5d12f1e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5d12f1e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f04af245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7f04af2ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f04af2f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7f04af32972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5d12f1e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5d12f1e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f04af22a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f04af22a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5d12f1e1aa3a]

Exiting...
06:48:40 (2778): wrapper (7.17.26016): starting
06:48:40 (2778): wrapper (7.17.26016): starting
06:48:40 (2778): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b7a623ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x705484c45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x705484cadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b7a625c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b7a627b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x705484c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x705484cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x705484cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x705484d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b7a6251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b7a621e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x705484c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x705484c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b7a621aa3a]

Exiting...
07:18:39 (2482): wrapper (7.17.26016): starting
07:18:40 (2482): wrapper (7.17.26016): starting
07:18:40 (2482): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57abd283ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73a839a45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x73a839aadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57abd285c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57abd287b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73a839a45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x73a839aecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x73a839af9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x73a839b2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x57abd2851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57abd281e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x73a839a2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x73a839a2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57abd281aa3a]

Exiting...
07:35:34 (2458): wrapper (7.17.26016): starting
07:35:34 (2458): wrapper (7.17.26016): starting
07:35:34 (2458): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57c02da3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x738e57645320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x738e576add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57c02da5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57c02da7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x738e57645320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x738e576ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x738e576f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x738e5772972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x57c02da51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57c02da1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x738e5762a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x738e5762a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57c02da1aa3a]

Exiting...
07:40:51 (2455): wrapper (7.17.26016): starting
07:40:51 (2455): wrapper (7.17.26016): starting
07:40:51 (2455): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/7/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
14:09:17 (2455): cmdock exited; CPU time 269804.166201
14:09:17 (2455): called boinc_finish(0)

</stderr_txt>
]]>