Task 82063497

Name corona_RdRp_v2_sidock_01759047_r2_s-20_0
Workunit 53475149
Created 14 Jun 2024, 2:06:35 UTC
Sent 20 Jun 2024, 3:55:12 UTC
Report deadline 26 Jun 2024, 3:55:12 UTC
Received 23 Jun 2024, 15:41:33 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 54280
Run time 3 days 10 hours 48 min 28 sec
CPU time 3 days 7 hours 43 min 13 sec
Validate state Valid
Credit 1,194.65
Device peak FLOPS 3.47 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.08 MB
Peak swap size 200.87 MB
Peak disk usage 20.49 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
22:55:18 (573703): wrapper (7.17.26016): starting
22:55:18 (573703): wrapper (7.17.26016): starting
22:55:18 (573703): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x568384e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7dfffba45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7dfffbaadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x568384e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x568384e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7dfffba45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7dfffbaecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7dfffbaf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7dfffbb2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x568384e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x568384e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7dfffba2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7dfffba2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x568384e1aa3a]

Exiting...
06:48:40 (2770): wrapper (7.17.26016): starting
06:48:40 (2770): wrapper (7.17.26016): starting
06:48:40 (2770): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x612bbd03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7add23845320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7add238add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x612bbd05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x612bbd07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7add23845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7add238ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7add238f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7add2392972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x612bbd051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x612bbd01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7add2382a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7add2382a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x612bbd01aa3a]

Exiting...
07:18:39 (2478): wrapper (7.17.26016): starting
07:18:40 (2478): wrapper (7.17.26016): starting
07:18:40 (2478): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5f16c883ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7c3a37845320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7c3a378add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5f16c885c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5f16c887b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7c3a37845320]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x5f16c883aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7c3a37845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7c3a378ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7c3a378f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7c3a3792972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5f16c8851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5f16c881e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7c3a3782a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7c3a3782a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5f16c881aa3a]

Exiting...
07:35:34 (2454): wrapper (7.17.26016): starting
07:35:34 (2454): wrapper (7.17.26016): starting
07:35:34 (2454): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x57b140e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7775b5245320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7775b52add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x57b140e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x57b140e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7775b5245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7775b52ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7775b52f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7775b532972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x57b140e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x57b140e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7775b522a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7775b522a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x57b140e1aa3a]

Exiting...
07:40:51 (2451): wrapper (7.17.26016): starting
07:40:51 (2451): wrapper (7.17.26016): starting
07:40:51 (2451): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
10:41:21 (2451): cmdock exited; CPU time 257481.772940
10:41:21 (2451): called boinc_finish(0)

</stderr_txt>
]]>


©2024 SiDock@home Team