Task 82063490

Name	corona_RdRp_v2_sidock_01759043_r1_s-20_0
Workunit	53475140
Created	14 Jun 2024, 2:06:34 UTC
Sent	20 Jun 2024, 3:55:12 UTC
Report deadline	26 Jun 2024, 3:55:12 UTC
Received	23 Jun 2024, 21:33:47 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54280
Run time	3 days 16 hours 41 min 13 sec
CPU time	3 days 13 hours 34 min 46 sec
Validate state	Valid
Credit	1,245.98
Device peak FLOPS	3.47 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.20 MB
Peak swap size	199.95 MB
Peak disk usage	20.69 MB
Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
22:55:20 (573732): wrapper (7.17.26016): starting
22:55:20 (573732): wrapper (7.17.26016): starting
22:55:20 (573732): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x64167323ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b8da7e45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7b8da7eadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x64167325c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x64167327b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b8da7e45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7b8da7eecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7b8da7ef9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7b8da7f2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x641673251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x64167321e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7b8da7e2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7b8da7e2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x64167321aa3a]

Exiting...
06:48:40 (2773): wrapper (7.17.26016): starting
06:48:40 (2773): wrapper (7.17.26016): starting
06:48:40 (2773): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x63f470e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f2272845320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7f22728add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x63f470e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x63f470e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f2272845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7f22728ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f22728f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7f227292972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x63f470e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x63f470e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f227282a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f227282a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x63f470e1aa3a]

Exiting...
07:18:39 (2480): wrapper (7.17.26016): starting
07:18:40 (2480): wrapper (7.17.26016): starting
07:18:40 (2480): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x62337723ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x737bfc245320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x737bfc2add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x62337725c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x62337727b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x737bfc245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x737bfc2ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x737bfc2f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x737bfc32972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x623377251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x62337721e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x737bfc22a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x737bfc22a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x62337721aa3a]

Exiting...
07:35:34 (2456): wrapper (7.17.26016): starting
07:35:34 (2456): wrapper (7.17.26016): starting
07:35:34 (2456): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5fabfd83ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73a051c45320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x73a051cadd45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5fabfd85c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5fabfd87b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x73a051c45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x73a051cecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x73a051cf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x73a051d2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5fabfd851adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5fabfd81e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x73a051c2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x73a051c2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5fabfd81aa3a]

Exiting...
07:40:51 (2453): wrapper (7.17.26016): starting
07:40:51 (2453): wrapper (7.17.26016): starting
07:40:51 (2453): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/5/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:33:36 (2453): cmdock exited; CPU time 278487.377110
16:33:36 (2453): called boinc_finish(0)

</stderr_txt>
]]>