Task 82059965

Name corona_RdRp_v2_sidock_01757269_r2_s-20_0
Workunit 53471593
Created 14 Jun 2024, 2:03:10 UTC
Sent 19 Jun 2024, 14:23:10 UTC
Report deadline 25 Jun 2024, 14:23:10 UTC
Received 22 Jun 2024, 20:02:24 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 16 hours 50 min 49 sec
CPU time 1 days 16 hours 47 min 42 sec
Validate state Valid
Credit 1,652.42
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.34 MB
Peak swap size 199.96 MB
Peak disk usage 20.59 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
19:17:39 (23817): wrapper (7.17.26016): starting
19:17:40 (23817): wrapper (7.17.26016): starting
19:17:40 (23817): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x564218f21f8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7fef6216f3c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7fef61fac03b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7fef61f8b859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7fef61ff629e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7fef61ffe32c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7fef61fffb5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x564218f3e3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x564218f5d8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7fef61fac0c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7fef6204626f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7fef6204bef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fef6207e88f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x564218f33adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x564218f00784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7fef61f8d0b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x564218efca3a]

Exiting...
10:03:32 (6230): wrapper (7.17.26016): starting
10:03:33 (6230): wrapper (7.17.26016): starting
10:03:33 (6230): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/3/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:02:09 (6230): cmdock exited; CPU time 132927.288654
23:02:09 (6230): called boinc_finish(0)

</stderr_txt>
]]>


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