Task 82059543

Name corona_RdRp_v2_sidock_01757081_r1_s-20_0
Workunit 53471216
Created 14 Jun 2024, 2:02:46 UTC
Sent 19 Jun 2024, 13:00:17 UTC
Report deadline 25 Jun 2024, 13:00:17 UTC
Received 22 Jun 2024, 13:44:48 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 12 hours 34 min 59 sec
CPU time 1 days 12 hours 32 min 8 sec
Validate state Valid
Credit 1,471.34
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.24 MB
Peak swap size 200.82 MB
Peak disk usage 20.47 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
17:19:34 (19466): wrapper (7.17.26016): starting
17:19:34 (19466): wrapper (7.17.26016): starting
17:19:34 (19466): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ca9d0caf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7f854d1733c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f854cfb003b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f854cf8f859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7f854cffa29e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7f854d00232c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7f854d003b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ca9d0e73dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ca9d1068e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7f854cfb00c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f854d04a26f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f854d04fef7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f854d08288f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ca9d0dcadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ca9d0a9784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f854cf910b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ca9d0a5a3a]

Exiting...
10:03:32 (6229): wrapper (7.17.26016): starting
10:03:33 (6229): wrapper (7.17.26016): starting
10:03:33 (6229): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/4/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:44:37 (6229): cmdock exited; CPU time 110301.818591
16:44:37 (6229): called boinc_finish(0)

</stderr_txt>
]]>


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