Task 82058369

Name	corona_RdRp_v2_sidock_01756487_r1_s-20_0
Workunit	53470028
Created	14 Jun 2024, 2:01:38 UTC
Sent	19 Jun 2024, 9:36:48 UTC
Report deadline	25 Jun 2024, 9:36:48 UTC
Received	4 Jul 2024, 9:36:41 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54774
Run time	1 days 13 hours 21 min 21 sec
CPU time	1 days 13 hours 21 min 21 sec
Validate state	Valid
Credit	1,440.17
Device peak FLOPS	4.88 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.45 MB
Peak swap size	200.81 MB
Peak disk usage	20.56 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
02:55:22 (1114716): wrapper (7.17.26016): starting
02:55:23 (1114716): wrapper (7.17.26016): starting
02:55:23 (1114716): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5ee6c523ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x792c40445320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x792c404add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5ee6c525c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5ee6c527b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x792c40445320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x792c404ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x792c404f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x792c4052972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5ee6c5251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5ee6c521e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x792c4042a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x792c4042a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5ee6c521aa3a]

Exiting...
12:18:25 (8922): wrapper (7.17.26016): starting
12:18:25 (8922): wrapper (7.17.26016): starting
12:18:25 (8922): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x58637203ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x71a4a1845320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x71a4a189eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x71a4a184526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x71a4a18288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x71a4a18297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x71a4a18a8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x71a4a18ab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x71a4a18add9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x58637205c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x58637207b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x71a4a1845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x71a4a18ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x71a4a18f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x71a4a192972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x586372051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x58637201e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x71a4a182a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x71a4a182a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x58637201aa3a]

Exiting...
22:29:27 (2731097): wrapper (7.17.26016): starting
22:29:28 (2731097): wrapper (7.17.26016): starting
22:29:28 (2731097): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/10/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
12:36:31 (2731097): cmdock exited; CPU time 67386.122486
12:36:31 (2731097): called boinc_finish(0)

</stderr_txt>
]]>