Task 82057511

Name corona_RdRp_v2_sidock_01756055_r2_s-20_0
Workunit 53469165
Created 14 Jun 2024, 2:00:50 UTC
Sent 19 Jun 2024, 6:48:43 UTC
Report deadline 25 Jun 2024, 6:48:43 UTC
Received 22 Jun 2024, 6:15:48 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 4
Run time 1 days 9 hours 57 min 42 sec
CPU time 1 days 9 hours 54 min 36 sec
Validate state Valid
Credit 1,370.02
Device peak FLOPS 6.67 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.17 MB
Peak swap size 200.84 MB
Peak disk usage 20.51 MB

Stderr output

<core_client_version>7.11.0</core_client_version>
<![CDATA[
<stderr_txt>
12:24:50 (4675): wrapper (7.17.26016): starting
12:24:50 (4675): wrapper (7.17.26016): starting
12:24:50 (4675): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55fb364baf8c]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x143c0)[0x7f830ab413c0]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x7f830a97e03b]
/lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x7f830a95d859]
/lib/x86_64-linux-gnu/libc.so.6(+0x8d29e)[0x7f830a9c829e]
/lib/x86_64-linux-gnu/libc.so.6(+0x9532c)[0x7f830a9d032c]
/lib/x86_64-linux-gnu/libc.so.6(+0x96b5c)[0x7f830a9d1b5c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55fb364d73dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55fb364f68e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x430c0)[0x7f830a97e0c0]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xdf)[0x7f830aa1826f]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f830aa1def7]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f830aa5088f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55fb364ccadf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55fb36499784]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x7f830a95f0b3]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55fb36495a3a]

Exiting...
10:03:32 (6228): wrapper (7.17.26016): starting
10:03:33 (6228): wrapper (7.17.26016): starting
10:03:33 (6228): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/home/hoarfrost/Computing/BOINC/slots/6/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:15:37 (6228): cmdock exited; CPU time 83382.272040
09:15:37 (6228): called boinc_finish(0)

</stderr_txt>
]]>


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