Task 82057082

Name corona_RdRp_v2_sidock_01755843_r2_s-20_0
Workunit 53468741
Created 14 Jun 2024, 2:00:22 UTC
Sent 19 Jun 2024, 5:00:13 UTC
Report deadline 25 Jun 2024, 5:00:13 UTC
Received 25 Jun 2024, 2:55:36 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 19471
Run time 2 days 23 hours 44 min 32 sec
CPU time 2 days 23 hours 41 min 50 sec
Validate state Valid
Credit 1,579.38
Device peak FLOPS 4.33 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.84 MB
Peak swap size 201.22 MB
Peak disk usage 20.53 MB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
10:13:16 (9071): wrapper (7.17.26016): starting
10:13:17 (9071): wrapper (7.17.26016): starting
10:13:17 (9071): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/boinc/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x59910503ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7c5b2aa45320]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x11c)[0x7c5b2aa9eb1c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x1e)[0x7c5b2aa4526e]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xdf)[0x7c5b2aa288ff]
/lib/x86_64-linux-gnu/libc.so.6(+0x297b6)[0x7c5b2aa297b6]
/lib/x86_64-linux-gnu/libc.so.6(+0xa8fe5)[0x7c5b2aaa8fe5]
/lib/x86_64-linux-gnu/libc.so.6(+0xab37c)[0x7c5b2aaab37c]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x7e)[0x7c5b2aaadd9e]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x59910505c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x59910507b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7c5b2aa45320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7c5b2aaecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7c5b2aaf9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7c5b2ab2972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x599105051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x59910501e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7c5b2aa2a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7c5b2aa2a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x59910501aa3a]

Exiting...
01:00:19 (2231): wrapper (7.17.26016): starting
01:00:20 (2231): wrapper (7.17.26016): starting
01:00:20 (2231): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/boinc/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
04:55:24 (2231): cmdock exited; CPU time 209116.424070
04:55:24 (2231): called boinc_finish(0)

</stderr_txt>
]]>


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