Task 82053307

Name corona_RdRp_v2_sidock_01753955_r2_s-20_0
Workunit 53464965
Created 14 Jun 2024, 1:56:50 UTC
Sent 18 Jun 2024, 17:14:13 UTC
Report deadline 24 Jun 2024, 17:14:13 UTC
Received 24 Jun 2024, 11:25:17 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 20609
Run time 2 days 1 hours 5 min 1 sec
CPU time 2 days 1 hours 4 min 42 sec
Validate state Valid
Credit 1,342.62
Device peak FLOPS 6.11 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.38 MB
Peak swap size 201.33 MB
Peak disk usage 20.48 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
00:10:09 (6561): wrapper (7.17.26016): starting
00:10:09 (6561): wrapper (7.17.26016): starting
00:10:09 (6561): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/boincdata/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b04423ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fe0ed5aa520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7fe0ed5fe9fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7fe0ed5aa476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7fe0ed5907f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7fe0ed5f1676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7fe0ed608cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7fe0ed60aa44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7fe0ed60d453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b04425c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b04427b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fe0ed5aa520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7fe0ed64d7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7fe0ed652677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fe0ed683f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b044251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b04421e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fe0ed591d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fe0ed591e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b04421aa3a]

Exiting...
17:09:02 (21952): wrapper (7.17.26016): starting
17:09:02 (21952): wrapper (7.17.26016): starting
17:09:02 (21952): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/boincdata/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
13:25:05 (21952): cmdock exited; CPU time 156780.747011
13:25:05 (21952): called boinc_finish(0)

</stderr_txt>
]]>


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