Task 82049932

Name corona_RdRp_v2_sidock_01752271_r1_s-20_0
Workunit 53461596
Created 14 Jun 2024, 1:53:39 UTC
Sent 18 Jun 2024, 5:31:29 UTC
Report deadline 24 Jun 2024, 5:31:29 UTC
Received 20 Jun 2024, 2:25:55 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 52321
Run time 1 days 20 hours 29 min 57 sec
CPU time 1 days 20 hours 16 min 27 sec
Validate state Valid
Credit 1,560.34
Device peak FLOPS 5.31 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 194.47 MB
Peak swap size 200.89 MB
Peak disk usage 20.54 MB

Stderr output

<core_client_version>7.22.0</core_client_version>
<![CDATA[
<stderr_txt>
08:31:33 (31988): wrapper (7.17.26016): starting
08:31:33 (31988): wrapper (7.17.26016): starting
08:31:33 (31988): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
20:18:14 (2600): wrapper (7.17.26016): starting
20:18:14 (2600): wrapper (7.17.26016): starting
20:18:14 (2600): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (17 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x560959e3ff8c]
/lib64/libpthread.so.0(+0x16910)[0x7f2a27137910]
/lib64/libc.so.6(gsignal+0x10d)[0x7f2a26f74d2b]
/lib64/libc.so.6(abort+0x177)[0x7f2a26f763e5]
/lib64/libc.so.6(+0x90c87)[0x7f2a26fbac87]
/lib64/libc.so.6(+0x98d2a)[0x7f2a26fc2d2a]
/lib64/libc.so.6(+0x9a7d4)[0x7f2a26fc47d4]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x560959e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x560959e7b8e4]
/lib64/libc.so.6(+0x4adc0)[0x7f2a26f74dc0]
/lib64/libc.so.6(clock_nanosleep+0x83)[0x7f2a27006181]
/lib64/libc.so.6(nanosleep+0x15)[0x7f2a2700bea3]
/lib64/libc.so.6(usleep+0x46)[0x7f2a27038ad4]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x560959e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x560959e1e784]
/lib64/libc.so.6(__libc_start_main+0xef)[0x7f2a26f5f24d]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x560959e1aa3a]

Exiting...
21:06:14 (3050): wrapper (7.17.26016): starting
21:06:14 (3050): wrapper (7.17.26016): starting
21:06:14 (3050): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/14/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:25:23 (3050): cmdock exited; CPU time 29563.716634
05:25:23 (3050): called boinc_finish(0)

</stderr_txt>
]]>


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