Task 82046046

Name	corona_RdRp_v2_sidock_01750335_r2_s-20_0
Workunit	53457725
Created	14 Jun 2024, 1:50:05 UTC
Sent	17 Jun 2024, 18:14:26 UTC
Report deadline	23 Jun 2024, 18:14:26 UTC
Received	28 Jun 2024, 21:27:48 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54418
Run time	3 days 13 hours 36 min 12 sec
CPU time	3 days 13 hours 11 min 57 sec
Validate state	Valid
Credit	2,127.86
Device peak FLOPS	5.55 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	192.93 MB
Peak swap size	201.16 MB
Peak disk usage	21.11 MB
Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
02:21:20 (4101356): wrapper (7.17.26016): starting
02:21:20 (4101356): wrapper (7.17.26016): starting
02:21:20 (4101356): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:52:30 (4132377): wrapper (7.17.26016): starting
03:52:30 (4132377): wrapper (7.17.26016): starting
03:52:30 (4132377): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
04:52:27 (4149931): wrapper (7.17.26016): starting
04:52:27 (4149931): wrapper (7.17.26016): starting
04:52:27 (4149931): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:52:28 (4167382): wrapper (7.17.26016): starting
05:52:28 (4167382): wrapper (7.17.26016): starting
05:52:28 (4167382): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:52:27 (4184934): wrapper (7.17.26016): starting
06:52:27 (4184934): wrapper (7.17.26016): starting
06:52:27 (4184934): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:23:13 (5036): wrapper (7.17.26016): starting
07:23:13 (5036): wrapper (7.17.26016): starting
07:23:13 (5036): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:00 (288573): wrapper (7.17.26016): starting
21:00:01 (288573): wrapper (7.17.26016): starting
21:00:01 (288573): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:53:26 (465805): wrapper (7.17.26016): starting
02:53:27 (465805): wrapper (7.17.26016): starting
02:53:27 (465805): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:21:29 (479140): wrapper (7.17.26016): starting
03:21:29 (479140): wrapper (7.17.26016): starting
03:21:29 (479140): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
04:52:52 (507657): wrapper (7.17.26016): starting
04:52:53 (507657): wrapper (7.17.26016): starting
04:52:53 (507657): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:52:53 (525249): wrapper (7.17.26016): starting
05:52:53 (525249): wrapper (7.17.26016): starting
05:52:53 (525249): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:00 (842803): wrapper (7.17.26016): starting
21:00:01 (842803): wrapper (7.17.26016): starting
21:00:01 (842803): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:00 (1386451): wrapper (7.17.26016): starting
21:00:00 (1386451): wrapper (7.17.26016): starting
21:00:00 (1386451): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:00 (1906705): wrapper (7.17.26016): starting
21:00:00 (1906705): wrapper (7.17.26016): starting
21:00:00 (1906705): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:16:53 (1930611): wrapper (7.17.26016): starting
22:16:54 (1930611): wrapper (7.17.26016): starting
22:16:54 (1930611): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:02:40 (1942751): wrapper (7.17.26016): starting
23:02:40 (1942751): wrapper (7.17.26016): starting
23:02:40 (1942751): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:17:06 (2070583): wrapper (7.17.26016): starting
05:17:06 (2070583): wrapper (7.17.26016): starting
05:17:06 (2070583): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:00 (2380025): wrapper (7.17.26016): starting
21:00:00 (2380025): wrapper (7.17.26016): starting
21:00:00 (2380025): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:17:21 (2540692): wrapper (7.17.26016): starting
05:17:21 (2540692): wrapper (7.17.26016): starting
05:17:21 (2540692): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:00 (2857474): wrapper (7.17.26016): starting
21:00:01 (2857474): wrapper (7.17.26016): starting
21:00:01 (2857474): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:17:24 (2864106): wrapper (7.17.26016): starting
21:17:24 (2864106): wrapper (7.17.26016): starting
21:17:24 (2864106): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:17:06 (3015207): wrapper (7.17.26016): starting
05:17:06 (3015207): wrapper (7.17.26016): starting
05:17:06 (3015207): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:00 (3336000): wrapper (7.17.26016): starting
21:00:00 (3336000): wrapper (7.17.26016): starting
21:00:00 (3336000): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:16:49 (3457169): wrapper (7.17.26016): starting
03:16:49 (3457169): wrapper (7.17.26016): starting
03:16:49 (3457169): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
04:16:21 (3474817): wrapper (7.17.26016): starting
04:16:21 (3474817): wrapper (7.17.26016): starting
04:16:21 (3474817): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
04:37:50 (3484234): wrapper (7.17.26016): starting
04:37:50 (3484234): wrapper (7.17.26016): starting
04:37:50 (3484234): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:17:05 (3497903): wrapper (7.17.26016): starting
05:17:06 (3497903): wrapper (7.17.26016): starting
05:17:06 (3497903): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:17:08 (3516410): wrapper (7.17.26016): starting
06:17:09 (3516410): wrapper (7.17.26016): starting
06:17:09 (3516410): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
07:16:29 (3535508): wrapper (7.17.26016): starting
07:16:30 (3535508): wrapper (7.17.26016): starting
07:16:30 (3535508): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:00 (3814651): wrapper (7.17.26016): starting
21:00:00 (3814651): wrapper (7.17.26016): starting
21:00:00 (3814651): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:17:09 (4034547): wrapper (7.17.26016): starting
05:17:09 (4034547): wrapper (7.17.26016): starting
05:17:09 (4034547): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:38:16 (4046089): wrapper (7.17.26016): starting
05:38:16 (4046089): wrapper (7.17.26016): starting
05:38:16 (4046089): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:16:41 (4058514): wrapper (7.17.26016): starting
06:16:41 (4058514): wrapper (7.17.26016): starting
06:16:41 (4058514): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:00 (154435): wrapper (7.17.26016): starting
21:00:00 (154435): wrapper (7.17.26016): starting
21:00:00 (154435): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:17:08 (161097): wrapper (7.17.26016): starting
21:17:08 (161097): wrapper (7.17.26016): starting
21:17:08 (161097): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:16:21 (178238): wrapper (7.17.26016): starting
22:16:21 (178238): wrapper (7.17.26016): starting
22:16:21 (178238): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:16:37 (194846): wrapper (7.17.26016): starting
23:16:37 (194846): wrapper (7.17.26016): starting
23:16:37 (194846): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:16:24 (213717): wrapper (7.17.26016): starting
00:16:24 (213717): wrapper (7.17.26016): starting
00:16:24 (213717): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:37:59 (242665): wrapper (7.17.26016): starting
01:38:00 (242665): wrapper (7.17.26016): starting
01:38:00 (242665): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:16:22 (255787): wrapper (7.17.26016): starting
02:16:22 (255787): wrapper (7.17.26016): starting
02:16:22 (255787): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
03:16:22 (273221): wrapper (7.17.26016): starting
03:16:22 (273221): wrapper (7.17.26016): starting
03:16:22 (273221): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
04:17:23 (291148): wrapper (7.17.26016): starting
04:17:23 (291148): wrapper (7.17.26016): starting
04:17:23 (291148): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:17:24 (308296): wrapper (7.17.26016): starting
05:17:24 (308296): wrapper (7.17.26016): starting
05:17:24 (308296): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:17:03 (326686): wrapper (7.17.26016): starting
06:17:03 (326686): wrapper (7.17.26016): starting
06:17:03 (326686): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:00:01 (625967): wrapper (7.17.26016): starting
21:00:01 (625967): wrapper (7.17.26016): starting
21:00:01 (625967): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
21:16:21 (632742): wrapper (7.17.26016): starting
21:16:21 (632742): wrapper (7.17.26016): starting
21:16:21 (632742): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
22:16:22 (655063): wrapper (7.17.26016): starting
22:16:22 (655063): wrapper (7.17.26016): starting
22:16:22 (655063): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
23:16:23 (672102): wrapper (7.17.26016): starting
23:16:23 (672102): wrapper (7.17.26016): starting
23:16:23 (672102): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
00:17:19 (691855): wrapper (7.17.26016): starting
00:17:20 (691855): wrapper (7.17.26016): starting
00:17:20 (691855): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
01:17:29 (710816): wrapper (7.17.26016): starting
01:17:29 (710816): wrapper (7.17.26016): starting
01:17:29 (710816): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:17:31 (727865): wrapper (7.17.26016): starting
02:17:31 (727865): wrapper (7.17.26016): starting
02:17:31 (727865): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:38:50 (738746): wrapper (7.17.26016): starting
02:38:50 (738746): wrapper (7.17.26016): starting
02:38:50 (738746): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:19:04 (784951): wrapper (7.17.26016): starting
05:19:05 (784951): wrapper (7.17.26016): starting
05:19:05 (784951): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
06:16:24 (802184): wrapper (7.17.26016): starting
06:16:24 (802184): wrapper (7.17.26016): starting
06:16:24 (802184): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56440803ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c510)[0x7f054c186510]
/lib/x86_64-linux-gnu/libc.so.6(+0x8a16c)[0x7f054c1d416c]
/lib/x86_64-linux-gnu/libc.so.6(gsignal+0x12)[0x7f054c186472]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f054c1704b2]
/lib/x86_64-linux-gnu/libc.so.6(+0x271ed)[0x7f054c1711ed]
/lib/x86_64-linux-gnu/libc.so.6(+0x93ae5)[0x7f054c1ddae5]
/lib/x86_64-linux-gnu/libc.so.6(+0x95864)[0x7f054c1df864]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x6f)[0x7f054c1e21df]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56440805c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56440807b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3c510)[0x7f054c186510]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f054c218aa5]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x13)[0x7f054c21d473]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f054c248af5]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x564408051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56440801e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x276ca)[0x7f054c1716ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f054c171785]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56440801aa3a]

Exiting...
21:00:00 (235076): wrapper (7.17.26016): starting
21:00:00 (235076): wrapper (7.17.26016): starting
21:00:00 (235076): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
02:22:27 (412621): wrapper (7.17.26016): starting
02:22:27 (412621): wrapper (7.17.26016): starting
02:22:27 (412621): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/61/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
05:27:39 (412621): cmdock exited; CPU time 8258.952198
05:27:39 (412621): called boinc_finish(0)

</stderr_txt>
]]>