Task 82040723

Name	corona_RdRp_v2_sidock_01747677_r2_s-20_0
Workunit	53452409
Created	14 Jun 2024, 1:45:08 UTC
Sent	16 Jun 2024, 22:14:24 UTC
Report deadline	22 Jun 2024, 22:14:24 UTC
Received	22 Jun 2024, 15:09:14 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	20609
Run time	2 days 3 hours 37 min 48 sec
CPU time	2 days 3 hours 37 min 12 sec
Validate state	Valid
Credit	1,454.35
Device peak FLOPS	6.11 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	193.27 MB
Peak swap size	200.18 MB
Peak disk usage	20.67 MB

Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
00:14:29 (40786): wrapper (7.17.26016): starting
00:14:29 (40786): wrapper (7.17.26016): starting
00:14:29 (40786): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/boincdata/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558bf163ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fbce8ff7520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7fbce905a3fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558bf165c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558bf167b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fbce8ff7520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7fbce909a7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7fbce909f677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fbce90d0f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558bf1651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558bf161e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fbce8fded90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fbce8fdee40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558bf161aa3a]

Exiting...
12:46:16 (1834): wrapper (7.17.26016): starting
12:46:16 (1834): wrapper (7.17.26016): starting
12:46:16 (1834): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/boincdata/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55b97b03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f7ea74a7520]
/lib/x86_64-linux-gnu/libc.so.6(pthread_kill+0x12c)[0x7f7ea74fb9fc]
/lib/x86_64-linux-gnu/libc.so.6(raise+0x16)[0x7f7ea74a7476]
/lib/x86_64-linux-gnu/libc.so.6(abort+0xd3)[0x7f7ea748d7f3]
/lib/x86_64-linux-gnu/libc.so.6(+0x89676)[0x7f7ea74ee676]
/lib/x86_64-linux-gnu/libc.so.6(+0xa0cfc)[0x7f7ea7505cfc]
/lib/x86_64-linux-gnu/libc.so.6(+0xa2a44)[0x7f7ea7507a44]
/lib/x86_64-linux-gnu/libc.so.6(free+0x73)[0x7f7ea750a453]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55b97b05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55b97b07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7f7ea74a7520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7f7ea754a7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7f7ea754f677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7f7ea7580f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55b97b051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55b97b01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7f7ea748ed90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7f7ea748ee40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55b97b01aa3a]

Exiting...
10:59:51 (2675): wrapper (7.17.26016): starting
10:59:51 (2675): wrapper (7.17.26016): starting
10:59:51 (2675): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/mnt/boincdata/boinc-client/slots/1/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
17:08:59 (2675): cmdock exited; CPU time 13768.094538
17:08:59 (2675): called boinc_finish(0)

</stderr_txt>
]]>