Task 82039972

Name corona_RdRp_v2_sidock_01747307_r1_s-20_0
Workunit 53451668
Created 14 Jun 2024, 1:44:21 UTC
Sent 16 Jun 2024, 19:19:32 UTC
Report deadline 22 Jun 2024, 19:19:32 UTC
Received 5 Jul 2024, 10:04:41 UTC
Server state Over
Outcome Computation error
Client state Aborted by user
Exit status 203 (0x000000CB) EXIT_ABORTED_VIA_GUI
Computer ID 36493
Run time 1 days 9 hours 25 min 50 sec
CPU time 1 days 9 hours 23 min 33 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 4.09 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.41 MB
Peak swap size 200.29 MB
Peak disk usage 20.70 MB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<message>
aborted by user</message>
<stderr_txt>
21:19:41 (3519): wrapper (7.17.26016): starting
21:19:42 (3519): wrapper (7.17.26016): starting
21:19:42 (3519): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x561dba03ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3d580)[0x7f6f9281a580]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1a)[0x7f6f92876dda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x561dba05c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x561dba07b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3d580)[0x7f6f9281a580]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x561dba03aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x3d580)[0x7f6f9281a580]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f6f928adfd5]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x13)[0x7f6f928c0353]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f6f928e8585]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x561dba051adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x561dba01e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x27c8a)[0x7f6f92804c8a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f6f92804d45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x561dba01aa3a]

Exiting...
06:40:00 (2571): wrapper (7.17.26016): starting
06:40:01 (2571): wrapper (7.17.26016): starting
06:40:01 (2571): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55dcef43ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3d580)[0x7fab194ae580]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1a)[0x7fab1950adda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55dcef45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55dcef47b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3d580)[0x7fab194ae580]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7fab19541fd5]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x13)[0x7fab19554353]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7fab1957c585]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55dcef451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55dcef41e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x27c8a)[0x7fab19498c8a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7fab19498d45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55dcef41aa3a]

Exiting...
22:55:56 (2687): wrapper (7.17.26016): starting
22:55:57 (2687): wrapper (7.17.26016): starting
22:55:57 (2687): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5652e243ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3d580)[0x7f0a870a9580]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1a)[0x7f0a87105dda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5652e245c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5652e247b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3d580)[0x7f0a870a9580]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f0a8713cfd5]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x13)[0x7f0a8714f353]
/lib/x86_64-linux-gnu/libc.so.6(sleep+0x3a)[0x7f0a8716008a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x5652e2451a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5652e241e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x27c8a)[0x7f0a87093c8a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f0a87093d45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5652e241aa3a]

Exiting...
15:19:34 (2591): wrapper (7.17.26016): starting
15:19:34 (2591): wrapper (7.17.26016): starting
15:19:34 (2591): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55c35ac3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3d580)[0x7f82f5279580]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1a)[0x7f82f52d5dda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55c35ac5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55c35ac7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3d580)[0x7f82f5279580]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f82f530cfd5]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x13)[0x7f82f531f353]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f82f5347585]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55c35ac51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55c35ac1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x27c8a)[0x7f82f5263c8a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f82f5263d45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55c35ac1aa3a]

Exiting...
17:37:13 (2569): wrapper (7.17.26016): starting
17:37:13 (2569): wrapper (7.17.26016): starting
17:37:13 (2569): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55bf6623ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x3d580)[0x7f7ee40f7580]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1a)[0x7f7ee4153dda]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55bf6625c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55bf6627b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x3d580)[0x7f7ee40f7580]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0x65)[0x7f7ee418afd5]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x13)[0x7f7ee419d353]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x45)[0x7f7ee41c5585]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55bf66251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55bf6621e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x27c8a)[0x7f7ee40e1c8a]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x85)[0x7f7ee40e1d45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55bf6621aa3a]

Exiting...
20:38:51 (2525): wrapper (7.17.26016): starting
20:38:52 (2525): wrapper (7.17.26016): starting
20:38:52 (2525): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)

</stderr_txt>
]]>


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