Task 82036812

Name	corona_RdRp_v2_sidock_01745735_r1_s-20_0
Workunit	53448524
Created	14 Jun 2024, 1:41:16 UTC
Sent	16 Jun 2024, 7:15:14 UTC
Report deadline	22 Jun 2024, 7:15:14 UTC
Received	23 Jun 2024, 20:14:24 UTC
Server state	Over
Outcome	Success
Client state	Done
Exit status	0 (0x00000000)
Computer ID	54280
Run time	6 days 2 hours 22 min 9 sec
CPU time	5 days 19 hours 41 min 23 sec
Validate state	Valid
Credit	2,075.94
Device peak FLOPS	3.47 GFLOPS
Application version	CurieMarieDock 0.2.0 long tasks v2.02 x86_64-pc-linux-gnu
Peak working set size	194.18 MB
Peak swap size	201.25 MB
Peak disk usage	20.88 MB
Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
02:15:19 (702427): wrapper (7.17.26016): starting
02:15:19 (702427): wrapper (7.17.26016): starting
02:15:19 (702427): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x558de7e3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fa74c15b520]
/lib/x86_64-linux-gnu/libc.so.6(free+0x1e)[0x7fa74c1be3fe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x558de7e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x558de7e7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x42520)[0x7fa74c15b520]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xc8)[0x7fa74c1fe7f8]
/lib/x86_64-linux-gnu/libc.so.6(__nanosleep+0x17)[0x7fa74c203677]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4f)[0x7fa74c234f2f]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x558de7e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x558de7e1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x29d90)[0x7fa74c142d90]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x80)[0x7fa74c142e40]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x558de7e1aa3a]

Exiting...
14:59:22 (2330): wrapper (7.17.26016): starting
14:59:23 (2330): wrapper (7.17.26016): starting
14:59:23 (2330): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
16:22:00 (7309): wrapper (7.17.26016): starting
16:22:00 (7309): wrapper (7.17.26016): starting
16:22:00 (7309): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
18:39:49 (544712): wrapper (7.17.26016): starting
18:39:49 (544712): wrapper (7.17.26016): starting
18:39:49 (544712): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x560cd463ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7791f9245320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7791f92add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x560cd465c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x560cd467b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7791f9245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7791f92ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7791f92f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7791f932972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x560cd4651adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x560cd461e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7791f922a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7791f922a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x560cd461aa3a]

Exiting...
06:48:40 (2762): wrapper (7.17.26016): starting
06:48:40 (2762): wrapper (7.17.26016): starting
06:48:40 (2762): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x593c19c3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f8f64245320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7f8f642add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x593c19c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x593c19c7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7f8f64245320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7f8f642ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7f8f642f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7f8f6432972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x593c19c51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x593c19c1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7f8f6422a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7f8f6422a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x593c19c1aa3a]

Exiting...
07:18:39 (2475): wrapper (7.17.26016): starting
07:18:40 (2475): wrapper (7.17.26016): starting
07:18:40 (2475): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (16 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x5dcfb923ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b2ed2845320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7b2ed28add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x5dcfb925c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x5dcfb927b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b2ed2845320]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3aec0)[0x5dcfb923aec0]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7b2ed2845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7b2ed28ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7b2ed28f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7b2ed292972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x5dcfb9251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x5dcfb921e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7b2ed282a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7b2ed282a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x5dcfb921aa3a]

Exiting...
07:35:34 (2451): wrapper (7.17.26016): starting
07:35:34 (2451): wrapper (7.17.26016): starting
07:35:34 (2451): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
SIGSEGV: segmentation violation
Stack trace (14 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x566d94a3ff8c]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7648cd845320]
/lib/x86_64-linux-gnu/libc.so.6(__libc_free+0x25)[0x7648cd8add45]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x566d94a5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x566d94a7b8e4]
/lib/x86_64-linux-gnu/libc.so.6(+0x45320)[0x7648cd845320]
/lib/x86_64-linux-gnu/libc.so.6(clock_nanosleep+0xbf)[0x7648cd8ecadf]
/lib/x86_64-linux-gnu/libc.so.6(nanosleep+0x17)[0x7648cd8f9a27]
/lib/x86_64-linux-gnu/libc.so.6(usleep+0x4c)[0x7648cd92972c]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x566d94a51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x566d94a1e784]
/lib/x86_64-linux-gnu/libc.so.6(+0x2a1ca)[0x7648cd82a1ca]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0x8b)[0x7648cd82a28b]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x566d94a1aa3a]

Exiting...
07:40:51 (2448): wrapper (7.17.26016): starting
07:40:51 (2448): wrapper (7.17.26016): starting
07:40:51 (2448): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc-client/slots/2/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
15:14:16 (2448): cmdock exited; CPU time 273899.943462
15:14:16 (2448): called boinc_finish(0)

</stderr_txt>
]]>