Task 82001566

Name corona_RdRp_v2_sidock_01711488_r2_s-20_2
Workunit 53340031
Created 10 Jun 2024, 16:40:28 UTC
Sent 13 Jun 2024, 19:28:08 UTC
Report deadline 19 Jun 2024, 19:28:08 UTC
Received 25 Jun 2024, 13:13:18 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 56209
Run time 22 hours 50 min 40 sec
CPU time 22 hours 49 min 30 sec
Validate state Valid
Credit 2,151.24
Device peak FLOPS 7.16 GFLOPS
Application version CurieMarieDock 0.2.0 long tasks v2.02
x86_64-pc-linux-gnu
Peak working set size 193.91 MB
Peak swap size 219.87 MB
Peak disk usage 20.67 MB

Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:14:08 (138606): wrapper (7.17.26016): starting
16:14:08 (138606): wrapper (7.17.26016): starting
16:14:08 (138606): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55bd21e3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f8bde43e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f8bde48b94c]
/lib64/libc.so.6(raise+0x16)[0x7f8bde43e646]
/lib64/libc.so.6(abort+0xd3)[0x7f8bde4287f3]
/lib64/libc.so.6(+0x29130)[0x7f8bde429130]
/lib64/libc.so.6(+0x959f7)[0x7f8bde4959f7]
/lib64/libc.so.6(+0x972ac)[0x7f8bde4972ac]
/lib64/libc.so.6(free+0x55)[0x7f8bde499d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55bd21e5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55bd21e7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f8bde43e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f8bde4d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f8bde4d8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f8bde504b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55bd21e51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55bd21e1e784]
/lib64/libc.so.6(+0x29590)[0x7f8bde429590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f8bde429640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55bd21e1aa3a]

Exiting...
06:01:24 (10775): wrapper (7.17.26016): starting
06:01:24 (10775): wrapper (7.17.26016): starting
06:01:24 (10775): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55731a43ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f3480e3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f3480e8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f3480e3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f3480e287f3]
/lib64/libc.so.6(+0x29130)[0x7f3480e29130]
/lib64/libc.so.6(+0x959f7)[0x7f3480e959f7]
/lib64/libc.so.6(+0x972ac)[0x7f3480e972ac]
/lib64/libc.so.6(free+0x55)[0x7f3480e99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55731a45c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55731a47b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f3480e3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f3480ed4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f3480ed8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f3480f04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55731a451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55731a41e784]
/lib64/libc.so.6(+0x29590)[0x7f3480e29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f3480e29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55731a41aa3a]

Exiting...
06:00:52 (2508): wrapper (7.17.26016): starting
06:00:52 (2508): wrapper (7.17.26016): starting
06:00:52 (2508): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x562887c3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fbbdb83e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7fbbdb88b94c]
/lib64/libc.so.6(raise+0x16)[0x7fbbdb83e646]
/lib64/libc.so.6(abort+0xd3)[0x7fbbdb8287f3]
/lib64/libc.so.6(+0x29130)[0x7fbbdb829130]
/lib64/libc.so.6(+0x959f7)[0x7fbbdb8959f7]
/lib64/libc.so.6(+0x972ac)[0x7fbbdb8972ac]
/lib64/libc.so.6(free+0x55)[0x7fbbdb899d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x562887c5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x562887c7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fbbdb83e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fbbdb8d4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fbbdb8d8c87]
/lib64/libc.so.6(sleep+0x3e)[0x7fbbdb8d8bbe]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51a9a)[0x562887c51a9a]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x562887c1e784]
/lib64/libc.so.6(+0x29590)[0x7fbbdb829590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fbbdb829640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x562887c1aa3a]

Exiting...
06:24:44 (2725): wrapper (7.17.26016): starting
06:24:44 (2725): wrapper (7.17.26016): starting
06:24:44 (2725): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x56025043ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fe2cfc3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7fe2cfc8b94c]
/lib64/libc.so.6(raise+0x16)[0x7fe2cfc3e646]
/lib64/libc.so.6(abort+0xd3)[0x7fe2cfc287f3]
/lib64/libc.so.6(+0x29130)[0x7fe2cfc29130]
/lib64/libc.so.6(+0x959f7)[0x7fe2cfc959f7]
/lib64/libc.so.6(+0x972ac)[0x7fe2cfc972ac]
/lib64/libc.so.6(free+0x55)[0x7fe2cfc99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x56025045c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x56025047b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fe2cfc3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fe2cfcd4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fe2cfcd8c87]
/lib64/libc.so.6(usleep+0x49)[0x7fe2cfd04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x560250451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x56025041e784]
/lib64/libc.so.6(+0x29590)[0x7fe2cfc29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fe2cfc29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x56025041aa3a]

Exiting...
06:00:51 (2736): wrapper (7.17.26016): starting
06:00:51 (2736): wrapper (7.17.26016): starting
06:00:51 (2736): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55ef2743ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7fcce1a3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7fcce1a8b94c]
/lib64/libc.so.6(raise+0x16)[0x7fcce1a3e646]
/lib64/libc.so.6(abort+0xd3)[0x7fcce1a287f3]
/lib64/libc.so.6(+0x29130)[0x7fcce1a29130]
/lib64/libc.so.6(+0x959f7)[0x7fcce1a959f7]
/lib64/libc.so.6(+0x972ac)[0x7fcce1a972ac]
/lib64/libc.so.6(free+0x55)[0x7fcce1a99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55ef2745c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55ef2747b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7fcce1a3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7fcce1ad4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7fcce1ad8c87]
/lib64/libc.so.6(usleep+0x49)[0x7fcce1b04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55ef27451adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55ef2741e784]
/lib64/libc.so.6(+0x29590)[0x7fcce1a29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7fcce1a29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55ef2741aa3a]

Exiting...
08:28:19 (2714): wrapper (7.17.26016): starting
08:28:19 (2714): wrapper (7.17.26016): starting
08:28:19 (2714): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55f96da3ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f6ffce3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f6ffce8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f6ffce3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f6ffce287f3]
/lib64/libc.so.6(+0x29130)[0x7f6ffce29130]
/lib64/libc.so.6(+0x959f7)[0x7f6ffce959f7]
/lib64/libc.so.6(+0x972ac)[0x7f6ffce972ac]
/lib64/libc.so.6(free+0x55)[0x7f6ffce99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55f96da5c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55f96da7b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f6ffce3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f6ffced4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f6ffced8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f6ffcf04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55f96da51adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55f96da1e784]
/lib64/libc.so.6(+0x29590)[0x7f6ffce29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f6ffce29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55f96da1aa3a]

Exiting...
06:15:42 (2727): wrapper (7.17.26016): starting
06:15:42 (2727): wrapper (7.17.26016): starting
06:15:42 (2727): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
free(): invalid pointer
SIGABRT: abort called
Stack trace (20 frames):
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x3ff8c)[0x55d31223ff8c]
/lib64/libc.so.6(+0x3e6f0)[0x7f40dfe3e6f0]
/lib64/libc.so.6(+0x8b94c)[0x7f40dfe8b94c]
/lib64/libc.so.6(raise+0x16)[0x7f40dfe3e646]
/lib64/libc.so.6(abort+0xd3)[0x7f40dfe287f3]
/lib64/libc.so.6(+0x29130)[0x7f40dfe29130]
/lib64/libc.so.6(+0x959f7)[0x7f40dfe959f7]
/lib64/libc.so.6(+0x972ac)[0x7f40dfe972ac]
/lib64/libc.so.6(free+0x55)[0x7f40dfe99d35]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x5c3dd)[0x55d31225c3dd]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x7b8e4)[0x55d31227b8e4]
/lib64/libc.so.6(+0x3e6f0)[0x7f40dfe3e6f0]
/lib64/libc.so.6(clock_nanosleep+0x65)[0x7f40dfed4075]
/lib64/libc.so.6(__nanosleep+0x17)[0x7f40dfed8c87]
/lib64/libc.so.6(usleep+0x49)[0x7f40dff04b29]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x51adf)[0x55d312251adf]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1e784)[0x55d31221e784]
/lib64/libc.so.6(+0x29590)[0x7f40dfe29590]
/lib64/libc.so.6(__libc_start_main+0x80)[0x7f40dfe29640]
../../projects/www.sidock.si_sidock/cmdock-l_wrapper_2.02_x86_64-pc-linux-gnu(+0x1aa3a)[0x55d31221aa3a]

Exiting...
06:34:41 (2729): wrapper (7.17.26016): starting
06:34:41 (2729): wrapper (7.17.26016): starting
06:34:41 (2729): wrapper: running cmdock (-c -j 1 -b 1 -r target.prm -p "/var/lib/boinc/slots/0/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out)
09:13:04 (2729): cmdock exited; CPU time 7592.338003
09:13:04 (2729): called boinc_finish(0)

</stderr_txt>
]]>


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